STRINGSTRING
W5S_2159 W5S_2159 W5S_2160 W5S_2160 W5S_2161 W5S_2161 W5S_2365 W5S_2365 W5S_2366 W5S_2366 W5S_2367 W5S_2367 W5S_2368 W5S_2368 W5S_2369 W5S_2369 W5S_2370 W5S_2370 W5S_2371 W5S_2371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_2159PTS system, mannose-specific IID component. (280 aa)
W5S_2160PTS mannose/fructose/sorbose transporter subunit IIC. (265 aa)
W5S_2161PTS system, mannose-specific IIAB component. (322 aa)
W5S_2365D-tagatose-1,6-bisphosphate aldolase subunit gatZ. (430 aa)
W5S_2366PTS system N-acetylgalactosamine-specific IIB component. (157 aa)
W5S_2367PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC. (260 aa)
W5S_2368PTS system N-acetylgalactosamine-specific, IID component. (249 aa)
W5S_2369PTS system, N-acetylgalactosamine-specific IIA component. (144 aa)
W5S_2370N-acetylglucosamine-6-phosphate deacetylase. (377 aa)
W5S_2371Tagatose-6-phosphate ketose/aldose isomerase. (384 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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