STRINGSTRING
W5S_0350 W5S_0350 W5S_0666 W5S_0666 W5S_0667 W5S_0667 W5S_0677 W5S_0677 W5S_0678 W5S_0678 W5S_0679 W5S_0679 W5S_1016 W5S_1016 W5S_1017 W5S_1017 W5S_1372 W5S_1372 W5S_2147 W5S_2147 W5S_2187 W5S_2187 W5S_2188 W5S_2188 W5S_2189 W5S_2189 W5S_2190 W5S_2190 W5S_2191 W5S_2191 W5S_2192 W5S_2192 W5S_2442 W5S_2442 W5S_3661 W5S_3661 mtlD mtlD W5S_4625 W5S_4625 W5S_4780 W5S_4780
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_0350PTS modulated transcriptional regulator, MtlR family. (516 aa)
W5S_0666Beta-phosphoglucomutase. (219 aa)
W5S_0667Kojibiose phosphorylase. (904 aa)
W5S_0677PTS family enzyme IIA, mannitol-specific, cryptic. (153 aa)
W5S_0678Phosphotransferase system, galactitol-specific IIB component. (90 aa)
W5S_0679Ascorbate-specific PTS system enzyme IIC. (457 aa)
W5S_1016Fructose-1-phosphate/6-phosphogluconate phosphatase. (188 aa)
W5S_1017Inner membrane protein yqaA. (142 aa)
W5S_1372Phosphatase YfbT. (218 aa)
W5S_2147Hexitol phosphatase HxpB. (221 aa)
W5S_2187Tagatose 1,6-diphosphate aldolase. (299 aa)
W5S_2188Serine protease. (177 aa)
W5S_2189Ascorbate-specific phosphotransferase enzyme IIA component. (145 aa)
W5S_2190Uncharacterized protein. (92 aa)
W5S_2191Ascorbate-specific PTS system enzyme IIC. (445 aa)
W5S_2192Phosphotransferase system lactose/cellobiose-specific IIB subunit. (97 aa)
W5S_2442Outer membrane protein romA. (353 aa)
W5S_3661Ascorbate-specific phosphotransferase enzyme IIA component. (135 aa)
mtlDMannitol-1-phosphate 5-dehydrogenase. (382 aa)
W5S_4625PTS system, mannitol-specific IIABC component. (635 aa)
W5S_4780Phosphatase YieH. (221 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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