STRINGSTRING
W5S_0876 W5S_0876 W5S_0877 W5S_0877 W5S_0878 W5S_0878 W5S_0879 W5S_0879 W5S_0881 W5S_0881
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_0876PTS system, glucitol/sorbitol-specific, IIA component. (122 aa)
W5S_08772-keto-3-deoxygluconate permease. (341 aa)
W5S_0878Type III effector Hrp-dependent outer. (572 aa)
W5S_08794-hydroxythreonine-4-phosphate dehydrogenase PdxA; Belongs to the PdxA family. (334 aa)
W5S_0881Transcriptional regulator, SorC family. (321 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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