STRINGSTRING
W5S_1878 W5S_1878 W5S_1879 W5S_1879 W5S_2982 W5S_2982 W5S_2983 W5S_2983 W5S_2984 W5S_2984 W5S_4389 W5S_4389 W5S_4390 W5S_4390 W5S_4391 W5S_4391 W5S_4392 W5S_4392 W5S_4712 W5S_4712 W5S_4713 W5S_4713 rbsA rbsA rbsD rbsD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_1878Ribose ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
W5S_1879Sugar ABC transporter ATP-binding protein. (503 aa)
W5S_2982Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
W5S_2983Ribose import ATP-binding protein rbsA. (515 aa)
W5S_2984Sugar ABC transporter substrate-binding protein. (312 aa)
W5S_4389Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family. (320 aa)
W5S_4390Inner membrane ABC transporter permease protein ytfT; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
W5S_4391Sugar transport system ATP-binding protein. (506 aa)
W5S_4392ABC transporter periplasmic-binding protein YtfQ. (318 aa)
W5S_4712Ribose ABC transporter substrate-binding protein RbsB. (295 aa)
W5S_4713Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (322 aa)
rbsARibose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (501 aa)
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (139 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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