(51 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and Bacterial periplasmic substrate-binding proteins network (Pectobacterium parmentieri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5S_0245	General L-amino acid transport ATP-binding subunit. (253 aa)
	W5S_0246	Inner membrane amino-acid ABC transporter permease protein yhdY. (364 aa)
	W5S_0247	Glutamate/glutamine/aspartate/asparagine transport system permease protein. (392 aa)
	W5S_0248	Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (341 aa)
	W5S_0249	L-cystine ABC transporter, permease protein. (221 aa)
	W5S_0250	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family. (255 aa)
	W5S_0943	Amino acid transporter (ABC superfamily, atp_bind and membrane). (487 aa)
	W5S_0944	Polar amino acid ABC transporter, inner membrane subunit. (248 aa)
	W5S_0945	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein. (274 aa)
	W5S_1357	Histidine ABC transporter substrate-binding protein HisJ; Belongs to the bacterial solute-binding protein 3 family. (259 aa)
	W5S_1358	Histidine ABC transporter, permease protein HisQ. (229 aa)
	W5S_1359	Histidine ABC transporter, permease protein HisM. (238 aa)
	W5S_1360	Histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP. (257 aa)
	W5S_1909	Arginine-binding periplasmic protein 2; Belongs to the bacterial solute-binding protein 3 family. (243 aa)
	artM	Arginine ABC transporter, permease protein ArtM. (222 aa)
	W5S_1911	Arginine ABC transporter, permease protein ArtQ. (238 aa)
	W5S_1912	Arginine ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (243 aa)
	W5S_1913	Arginine ABC transporter, ATP-binding protein. (249 aa)
	W5S_2861	Glutamine ABC transporter, glutamine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
	W5S_2862	Glutamine ABC transporter, permease protein. (219 aa)
	glnQ	Glutamine ABC transporter, ATP-binding protein. (240 aa)
	W5S_3137	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein. (298 aa)
	W5S_3138	Glutamate/aspartate ABC transporter, permease protein GltJ. (246 aa)
	W5S_3139	Glutamate/aspartate ABC transporter, permease protein GltK. (224 aa)
	artP	Glutamate/aspartate ABC transporter, ATP-binding protein. (241 aa)
	W5S_3600	Amidase, hydantoinase/carbamoylase family. (429 aa)
	W5S_3601	Serine--pyruvate aminotransferase/L-alanine:glyoxylate aminotransferase. (414 aa)
	W5S_3602	ATP-binding component of glutamine high-affinity transport system. (247 aa)
	W5S_3603	Polar amino acid ABC transporter, inner membrane subunit. (217 aa)
	W5S_3604	Polar amino acid ABC transporter, inner membrane subunit. (222 aa)
	W5S_3605	Surface antigen, CjaA; Belongs to the bacterial solute-binding protein 3 family. (268 aa)
	W5S_3653	Glutamine ABC transporter, glutamine-binding periplasmic protein. (256 aa)
	W5S_3654	Arginine transport system permease protein artQ. (254 aa)
	W5S_3655	Amino acid ABC transporter ATP-binding protein. (240 aa)
	W5S_4207	Histidine ABC transporter, permease protein HisQ. (238 aa)
	W5S_4208	Arginine ABC transporter, permease protein ArtM. (244 aa)
	W5S_4209	Histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP. (254 aa)
	W5S_4210	Amino acid ABC transporter, solute binding protein. (289 aa)
	W5S_4337	Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein. (350 aa)
	W5S_4338	Glutamate/glutamine/aspartate/asparagine transport system permease protein. (434 aa)
	W5S_4339	Inner membrane amino-acid ABC transporter permease protein yhdY. (369 aa)
	W5S_4340	General L-amino acid ABC transporter ATP-binding protein. (266 aa)
	W5S_4341	Aminoacylase (N-acyl-L-amino acid amidohydrolase). (385 aa)
	W5S_4342	Amino acid ABC transporter ATP-binding protein. (253 aa)
	W5S_4343	Arginine transport system permease protein artQ. (223 aa)
	W5S_4344	Amino acid ABC transporter amino acid-binding portion; Belongs to the bacterial solute-binding protein 3 family. (263 aa)
	W5S_4345	N-acetyltransferase ytmI. (180 aa)
	W5S_4349	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (269 aa)
	W5S_4777	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (278 aa)
	W5S_4778	Glutamate/aspartate ABC transporter, permease protein GltJ. (247 aa)
	W5S_4779	L-cystine ABC transporter, permease protein. (242 aa)

Your Current Organism:

Pectobacterium parmentieri

NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5S_0245	W5S_0246	W5S_0245	W5S_0246	General L-amino acid transport ATP-binding subunit.	Inner membrane amino-acid ABC transporter permease protein yhdY.	0.990
W5S_0245	W5S_0247	W5S_0245	W5S_0247	General L-amino acid transport ATP-binding subunit.	Glutamate/glutamine/aspartate/asparagine transport system permease protein.	0.985
W5S_0245	W5S_0248	W5S_0245	W5S_0248	General L-amino acid transport ATP-binding subunit.	Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.972
W5S_0245	W5S_0249	W5S_0245	W5S_0249	General L-amino acid transport ATP-binding subunit.	L-cystine ABC transporter, permease protein.	0.859
W5S_0245	W5S_0250	W5S_0245	W5S_0250	General L-amino acid transport ATP-binding subunit.	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	0.577
W5S_0245	W5S_0944	W5S_0245	W5S_0944	General L-amino acid transport ATP-binding subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.868
W5S_0245	W5S_0945	W5S_0245	W5S_0945	General L-amino acid transport ATP-binding subunit.	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein.	0.755
W5S_0245	W5S_1357	W5S_0245	W5S_1357	General L-amino acid transport ATP-binding subunit.	Histidine ABC transporter substrate-binding protein HisJ; Belongs to the bacterial solute-binding protein 3 family.	0.521
W5S_0245	W5S_1358	W5S_0245	W5S_1358	General L-amino acid transport ATP-binding subunit.	Histidine ABC transporter, permease protein HisQ.	0.586
W5S_0245	W5S_1359	W5S_0245	W5S_1359	General L-amino acid transport ATP-binding subunit.	Histidine ABC transporter, permease protein HisM.	0.589
W5S_0245	W5S_1909	W5S_0245	W5S_1909	General L-amino acid transport ATP-binding subunit.	Arginine-binding periplasmic protein 2; Belongs to the bacterial solute-binding protein 3 family.	0.643
W5S_0245	W5S_1911	W5S_0245	W5S_1911	General L-amino acid transport ATP-binding subunit.	Arginine ABC transporter, permease protein ArtQ.	0.701
W5S_0245	W5S_1912	W5S_0245	W5S_1912	General L-amino acid transport ATP-binding subunit.	Arginine ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.641
W5S_0245	W5S_2861	W5S_0245	W5S_2861	General L-amino acid transport ATP-binding subunit.	Glutamine ABC transporter, glutamine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.	0.551
W5S_0245	W5S_2862	W5S_0245	W5S_2862	General L-amino acid transport ATP-binding subunit.	Glutamine ABC transporter, permease protein.	0.844
W5S_0245	W5S_3137	W5S_0245	W5S_3137	General L-amino acid transport ATP-binding subunit.	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein.	0.543
W5S_0245	W5S_3138	W5S_0245	W5S_3138	General L-amino acid transport ATP-binding subunit.	Glutamate/aspartate ABC transporter, permease protein GltJ.	0.849
W5S_0245	W5S_3139	W5S_0245	W5S_3139	General L-amino acid transport ATP-binding subunit.	Glutamate/aspartate ABC transporter, permease protein GltK.	0.880
W5S_0245	W5S_3603	W5S_0245	W5S_3603	General L-amino acid transport ATP-binding subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.800
W5S_0245	W5S_3604	W5S_0245	W5S_3604	General L-amino acid transport ATP-binding subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.823

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