(14 nodes) Ligand-gated channel activity, and Amino acid ABC transporter, permease protein, 3-TM domain network (Pectobacterium parmentieri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5S_0249	L-cystine ABC transporter, permease protein. (221 aa)
	W5S_0250	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family. (255 aa)
	W5S_0943	Amino acid transporter (ABC superfamily, atp_bind and membrane). (487 aa)
	W5S_0944	Polar amino acid ABC transporter, inner membrane subunit. (248 aa)
	W5S_0945	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein. (274 aa)
	W5S_2861	Glutamine ABC transporter, glutamine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
	W5S_2862	Glutamine ABC transporter, permease protein. (219 aa)
	glnQ	Glutamine ABC transporter, ATP-binding protein. (240 aa)
	W5S_3653	Glutamine ABC transporter, glutamine-binding periplasmic protein. (256 aa)
	W5S_3655	Amino acid ABC transporter ATP-binding protein. (240 aa)
	W5S_4349	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (269 aa)
	W5S_4777	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (278 aa)
	W5S_4778	Glutamate/aspartate ABC transporter, permease protein GltJ. (247 aa)
	W5S_4779	L-cystine ABC transporter, permease protein. (242 aa)

Your Current Organism:

Pectobacterium parmentieri

NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5S_0249	W5S_0250	W5S_0249	W5S_0250	L-cystine ABC transporter, permease protein.	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	0.987
W5S_0249	W5S_0943	W5S_0249	W5S_0943	L-cystine ABC transporter, permease protein.	Amino acid transporter (ABC superfamily, atp_bind and membrane).	0.769
W5S_0249	W5S_0944	W5S_0249	W5S_0944	L-cystine ABC transporter, permease protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.513
W5S_0249	W5S_0945	W5S_0249	W5S_0945	L-cystine ABC transporter, permease protein.	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein.	0.702
W5S_0249	W5S_2861	W5S_0249	W5S_2861	L-cystine ABC transporter, permease protein.	Glutamine ABC transporter, glutamine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.	0.979
W5S_0249	W5S_2862	W5S_0249	W5S_2862	L-cystine ABC transporter, permease protein.	Glutamine ABC transporter, permease protein.	0.466
W5S_0249	W5S_3653	W5S_0249	W5S_3653	L-cystine ABC transporter, permease protein.	Glutamine ABC transporter, glutamine-binding periplasmic protein.	0.968
W5S_0249	W5S_3655	W5S_0249	W5S_3655	L-cystine ABC transporter, permease protein.	Amino acid ABC transporter ATP-binding protein.	0.874
W5S_0249	W5S_4349	W5S_0249	W5S_4349	L-cystine ABC transporter, permease protein.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.832
W5S_0249	W5S_4777	W5S_0249	W5S_4777	L-cystine ABC transporter, permease protein.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.710
W5S_0249	W5S_4778	W5S_0249	W5S_4778	L-cystine ABC transporter, permease protein.	Glutamate/aspartate ABC transporter, permease protein GltJ.	0.523
W5S_0249	W5S_4779	W5S_0249	W5S_4779	L-cystine ABC transporter, permease protein.	L-cystine ABC transporter, permease protein.	0.667
W5S_0249	glnQ	W5S_0249	W5S_2863	L-cystine ABC transporter, permease protein.	Glutamine ABC transporter, ATP-binding protein.	0.859
W5S_0250	W5S_0249	W5S_0250	W5S_0249	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	L-cystine ABC transporter, permease protein.	0.987
W5S_0250	W5S_0943	W5S_0250	W5S_0943	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Amino acid transporter (ABC superfamily, atp_bind and membrane).	0.568
W5S_0250	W5S_0944	W5S_0250	W5S_0944	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid ABC transporter, inner membrane subunit.	0.765
W5S_0250	W5S_0945	W5S_0250	W5S_0945	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein.	0.436
W5S_0250	W5S_2862	W5S_0250	W5S_2862	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Glutamine ABC transporter, permease protein.	0.859
W5S_0250	W5S_3655	W5S_0250	W5S_3655	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter ATP-binding protein.	0.580
W5S_0250	W5S_4778	W5S_0250	W5S_4778	L-cystine-binding protein TcyA; Belongs to the bacterial solute-binding protein 3 family.	Glutamate/aspartate ABC transporter, permease protein GltJ.	0.703

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