STRINGSTRING
W5S_0119 W5S_0119 W5S_0120 W5S_0120 ugpE ugpE ugpC ugpC W5S_0748 W5S_0748 W5S_0749 W5S_0749 W5S_0751 W5S_0751 W5S_0752 W5S_0752 W5S_0864 W5S_0864 W5S_0865 W5S_0865 W5S_0866 W5S_0866 W5S_0867 W5S_0867 W5S_1225 W5S_1225 W5S_1226 W5S_1226 W5S_1227 W5S_1227 W5S_1228 W5S_1228 W5S_2114 W5S_2114 W5S_2139 W5S_2139 W5S_2140 W5S_2140 W5S_2141 W5S_2141 W5S_2142 W5S_2142 W5S_2375 W5S_2375 W5S_3810 W5S_3810 W5S_3811 W5S_3811 W5S_3812 W5S_3812 W5S_3815 W5S_3815
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_0119Sn-glycerol-3-phosphate-binding periplasmic protein ugpB. (444 aa)
W5S_0120Sn-glycerol-3-phosphate transport system permease protein UgpA. (295 aa)
ugpESn-glycerol-3-phosphate transport system permease protein UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (281 aa)
ugpCSn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (357 aa)
W5S_0748Sugar ABC transporter permease. (290 aa)
W5S_0749Glycerol-3-phosphate ABC transporter, permease protein. (299 aa)
W5S_0751Sn-glycerol-3-phosphate transport ATP-binding protein; Belongs to the ABC transporter superfamily. (362 aa)
W5S_0752Glycerol-3-phosphate-binding periplasmic protein. (435 aa)
W5S_0864ABC transporter substrate-binding protein. (421 aa)
W5S_0865Sugar ABC transporter permease. (293 aa)
W5S_0866L-arabinose transport system permease protein AraQ. (270 aa)
W5S_0867ATP-binding component of ABC mannitol transporter; Belongs to the ABC transporter superfamily. (361 aa)
W5S_1225Maltose/maltodextrin transport system. (282 aa)
W5S_1226ABC maltose/maltodextrin transporter, permease subunit. (434 aa)
W5S_1227Maltodextrin-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family. (410 aa)
W5S_1228Maltose/maltodextrin ABC transporter, ATP-binding protein MalK; Belongs to the ABC transporter superfamily. (360 aa)
W5S_2114Sn-glycerol-3-phosphate-binding periplasmic protein ugpB. (445 aa)
W5S_2139Oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein. (429 aa)
W5S_2140Carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-); Belongs to the ABC transporter superfamily. (375 aa)
W5S_2141Oligogalacturonide ABC tansporter, permease protein. (301 aa)
W5S_2142Oligogalacturonide ABC tansporter, permease protein. (296 aa)
W5S_2375Oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein. (439 aa)
W5S_3810Sn-glycerol-3-phosphate-binding protein. (349 aa)
W5S_3811Sugar-transport integral membrane protein ABC transporter UspA. (332 aa)
W5S_3812Maltose/maltodextrin ABC transporter, ATP-binding protein MalK; Belongs to the ABC transporter superfamily. (363 aa)
W5S_3815N-Acetyl-D-glucosamine ABC transport system sugar-binding protein. (435 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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