STRINGSTRING
W5S_0347 W5S_0347 W5S_1142 W5S_1142 W5S_0877 W5S_0877 W5S_0753 W5S_0753 kdgT kdgT W5S_2607 W5S_2607 dtpA dtpA W5S_1872 W5S_1872 W5S_1869 W5S_1869 gltP gltP lacY lacY
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_0347PTS enzyme-II fructose. (363 aa)
W5S_1142Putative 3-phenylpropionic acid transporter. (386 aa)
W5S_08772-keto-3-deoxygluconate permease. (341 aa)
W5S_0753Lactose permease. (420 aa)
kdgT2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family. (318 aa)
W5S_2607Oligosaccharide:H+ symporter. (410 aa)
dtpADipeptide and tripeptide permease A; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (506 aa)
W5S_1872PTS system, fructose-specific IIBC component. (563 aa)
W5S_1869Sugar efflux transporter SetB. (392 aa)
gltPProton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. GltP subfamily. (438 aa)
lacYLactose permease. (418 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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