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W5S_1089 W5S_1089 W5S_1088 W5S_1088 W5S_1087 W5S_1087 W5S_1074 W5S_1074 W5S_1056 W5S_1056 W5S_0949 W5S_0949 cysZ cysZ W5S_0897 W5S_0897 W5S_0896 W5S_0896 W5S_0895 W5S_0895 W5S_0877 W5S_0877 W5S_0842 W5S_0842 W5S_0753 W5S_0753 W5S_0728 W5S_0728 W5S_0577 W5S_0577 W5S_4238 W5S_4238 kdgT kdgT corA corA W5S_4373 W5S_4373 W5S_4400 W5S_4400 W5S_4479 W5S_4479 W5S_4481 W5S_4481 kup kup atpB atpB atpE atpE atpF atpF atpH atpH atpA atpA atpG atpG atpD atpD W5S_3884 W5S_3884 atpC atpC W5S_4770 W5S_4770 W5S_4772 W5S_4772 pstB-2 pstB-2 sthA sthA W5S_0259 W5S_0259 W5S_0267 W5S_0267 W5S_0519 W5S_0519 W5S_0347 W5S_0347 W5S_0576 W5S_0576 nhaA nhaA W5S_4104 W5S_4104 W5S_4132 W5S_4132 kefB kefB W5S_4197 W5S_4197 W5S_3878 W5S_3878 W5S_3877 W5S_3877 W5S_3819 W5S_3819 W5S_3751 W5S_3751 W5S_3681 W5S_3681 W5S_3479 W5S_3479 crcB-2 crcB-2 W5S_3269 W5S_3269 W5S_3268 W5S_3268 W5S_3267 W5S_3267 W5S_3266 W5S_3266 W5S_3247 W5S_3247 crcB crcB zitB zitB W5S_2975 W5S_2975 W5S_2929 W5S_2929 W5S_2927 W5S_2927 ccmA ccmA W5S_2607 W5S_2607 zntB zntB W5S_2550 W5S_2550 W5S_2541 W5S_2541 pntA pntA W5S_2380 W5S_2380 dtpA dtpA W5S_2240 W5S_2240 nhaB nhaB mntP mntP znuC znuC W5S_1876 W5S_1876 W5S_1872 W5S_1872 W5S_1869 W5S_1869 fliI fliI W5S_1752 W5S_1752 gltP gltP W5S_1697 W5S_1697 fbpC-2 fbpC-2 lacY lacY W5S_1439 W5S_1439 W5S_1426 W5S_1426 W5S_1425 W5S_1425 fbpC fbpC pstB pstB pstA pstA W5S_1233 W5S_1233 W5S_1144 W5S_1144 W5S_1143 W5S_1143 W5S_1142 W5S_1142 cysA cysA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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W5S_1089Sulfate ABC transporter, inner membrane subunit CysW. (293 aa)
W5S_1088Sulfate transport system permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (270 aa)
W5S_1087Sulfate ABC transporter, periplasmic sulfate-binding protein. (336 aa)
W5S_1074Ferrichrome-binding periplasmic protein. (308 aa)
W5S_1056Putrescine ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (361 aa)
W5S_0949FhuE receptor. (747 aa)
cysZSulfate transporter CysZ; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family. (263 aa)
W5S_0897Sulfate ABC transporter, inner membrane subunit CysW. (288 aa)
W5S_0896Sulfate transport system permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (277 aa)
W5S_0895Sulfate ABC transporter, periplasmic sulfate-binding protein. (342 aa)
W5S_08772-keto-3-deoxygluconate permease. (341 aa)
W5S_0842Ferric aerobactin receptor. (732 aa)
W5S_0753Lactose permease. (420 aa)
W5S_0728Ferrichrome receptor FcuA. (759 aa)
W5S_0577R4-like protein. (295 aa)
W5S_4238Ferrichrome receptor FcuA. (729 aa)
kdgT2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family. (318 aa)
corAMagnesium transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. (316 aa)
W5S_4373Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (494 aa)
W5S_4400Trk system potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (483 aa)
W5S_4479TonB-dependent receptor. (734 aa)
W5S_4481Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (288 aa)
kupLow affinity potassium transport system protein kup; Responsible for the low-affinity transport of potassium into the cell, with the probable concomitant uptake of protons (symport system); Belongs to the HAK/KUP transporter (TC 2.A.72) family. (622 aa)
atpBATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. (266 aa)
atpEATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (79 aa)
atpFATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (156 aa)
atpHATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (177 aa)
atpAATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (513 aa)
atpGATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (287 aa)
atpDATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (460 aa)
W5S_3884Ferrienterobactin receptor. (771 aa)
atpCATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. (139 aa)
W5S_4770Phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (346 aa)
W5S_4772Phosphate transport system permease protein PstA. (295 aa)
pstB-2Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (257 aa)
sthASoluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (468 aa)
W5S_0259Sodium/pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (483 aa)
W5S_0267Outer membrane receptor, probably tonB dependent. (663 aa)
W5S_0519Magnesium-translocating P-type ATPase. (903 aa)
W5S_0347PTS enzyme-II fructose. (363 aa)
W5S_0576Iha adhesin (Putative receptor). (338 aa)
nhaANa(+)/H(+) antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. (398 aa)
W5S_4104Inorganic phosphate transporter, sodium-dependent. (548 aa)
W5S_4132Trk system potassium uptake protein TrkA. (458 aa)
kefBGlutathione-regulated potassium-efflux system protein KefB; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport. (603 aa)
W5S_4197Oligopeptide transport ATP-binding protein AmiF. (269 aa)
W5S_3878Ferric iron siderophore receptor. (412 aa)
W5S_3877TonB-dependent receptor plug. (297 aa)
W5S_3819Metal ABC transporter, ATP-binding protein. (247 aa)
W5S_3751Lysophospholipid transporter lplT. (407 aa)
W5S_3681Ferrichrome receptor FcuA. (727 aa)
W5S_3479Antisigma-factor antagonist, STAS. (492 aa)
crcB-2Putative fluoride ion transporter CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (124 aa)
W5S_3269Cytochrome o ubiquinol oxidase subunit IV. (110 aa)
W5S_3268Cytochrome o ubiquinol oxidase, subunit III. (204 aa)
W5S_3267Cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (663 aa)
W5S_3266Ubiquinol oxidase subunit 2. (320 aa)
W5S_3247Ammonium transporter. (428 aa)
crcBPutative fluoride ion transporter CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (127 aa)
zitBZinc transporter ZitB; Involved in zinc efflux across the cytoplasmic membrane, thus reducing zinc accumulation in the cytoplasm and rendering bacteria more resistant to zinc. It may contribute to zinc homeostasis at low concentrations of zinc; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily. (310 aa)
W5S_2975Ferric iron uptake ABC transporter (FeT) family, ATP-binding protein. (224 aa)
W5S_2929Putative ABC transporter ATP-binding protein ybhF. (580 aa)
W5S_2927Ferric aerobactin receptor. (701 aa)
ccmACytochrome c biogenesis ATP-binding export protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (206 aa)
W5S_2607Oligosaccharide:H+ symporter. (410 aa)
zntBZinc transport protein ZntB; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. (327 aa)
W5S_2550C4-dicarboxylic acid transporter DauA. (567 aa)
W5S_2541Nitrate/nitrite transporter. (462 aa)
pntANAD(P) transhydrogenase subunit alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family. (509 aa)
W5S_2380NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family. (462 aa)
dtpADipeptide and tripeptide permease A; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (506 aa)
W5S_2240Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (251 aa)
nhaBNa(+)/H(+) antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. (526 aa)
mntPPutative manganese efflux pump MntP; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family. (190 aa)
znuCZinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (252 aa)
W5S_1876Colicin I receptor. (709 aa)
W5S_1872PTS system, fructose-specific IIBC component. (563 aa)
W5S_1869Sugar efflux transporter SetB. (392 aa)
fliIFlagellum-specific ATP synthase FliI. (456 aa)
W5S_1752Ferrienterobactin receptor. (728 aa)
gltPProton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. GltP subfamily. (438 aa)
W5S_1697Iron permease, FTR1 family. (634 aa)
fbpC-2Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (349 aa)
lacYLactose permease. (418 aa)
W5S_1439Antisigma-factor antagonist, STAS. (499 aa)
W5S_1426Nitrate ABC transporter, ATPase subunits C and D. (264 aa)
W5S_1425Nitrate ABC transporter, inner membrane subunit. (304 aa)
fbpCFe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (346 aa)
pstBPhosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (271 aa)
pstAPhosphate transport system permease protein PstA. (548 aa)
W5S_1233Magnesium transporter MgtE; Acts as a magnesium transporter. (492 aa)
W5S_1144Nickel/cobalt efflux system; Belongs to the NiCoT transporter (TC 2.A.52) family. (357 aa)
W5S_1143Uncharacterized protein. (202 aa)
W5S_1142Putative 3-phenylpropionic acid transporter. (386 aa)
cysASulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (330 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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