STRINGSTRING
W5S_2991 W5S_2991 W5S_0656 W5S_0656 W5S_1002 W5S_1002 W5S_1120 W5S_1120 W5S_1170 W5S_1170 W5S_1197 W5S_1197 W5S_1758 W5S_1758 W5S_1902 W5S_1902 ycgR ycgR glgS glgS W5S_2748 W5S_2748 W5S_3326 W5S_3326 W5S_4005 W5S_4005 W5S_4298 W5S_4298 W5S_4790 W5S_4790
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_2991MASE2 domain/diguanylate cyclase. (353 aa)
W5S_0656GGDEF domain-containing protein. (412 aa)
W5S_1002UPF0056 inner membrane protein. (224 aa)
W5S_1120EAL domain containing protein involved in flagellar function. (258 aa)
W5S_1170TPR_21 domain-containing protein. (206 aa)
W5S_1197Membrane-bound diguanylate cyclase. (212 aa)
W5S_1758Diguanylate cyclase yddV. (470 aa)
W5S_1902Uncharacterized protein. (160 aa)
ycgRFlagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (254 aa)
glgSSurface composition regulator; Major determinant of cell surface composition. Negatively regulates motility, adhesion and synthesis of biofilm exopolysaccharides. (65 aa)
W5S_2748Diguanylate phosphodiesterase. (241 aa)
W5S_3326Signaling protein (GGDEF domain). (235 aa)
W5S_4005GGDEF domain-containing protein. (362 aa)
W5S_4298UPF0056 inner membrane protein. (197 aa)
W5S_4790Signaling membrane protein. (489 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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