STRINGSTRING
W5S_4717 W5S_4717 W5S_4234 W5S_4234 W5S_4246 W5S_4246 ntrC ntrC W5S_0044 W5S_0044 W5S_0130 W5S_0130 W5S_0321 W5S_0321 W5S_0781 W5S_0781 W5S_0788 W5S_0788 W5S_0901 W5S_0901 W5S_1028 W5S_1028 W5S_1136 W5S_1136 W5S_1213 W5S_1213 W5S_1423 W5S_1423 W5S_1457 W5S_1457 W5S_1552 W5S_1552 W5S_1553 W5S_1553 W5S_1567 W5S_1567 W5S_1689 W5S_1689 W5S_1751 W5S_1751 cheB cheB W5S_1771 W5S_1771 dpiA dpiA W5S_2096 W5S_2096 W5S_2112 W5S_2112 rssB rssB W5S_2543 W5S_2543 W5S_2555 W5S_2555 W5S_2691 W5S_2691 W5S_3108 W5S_3108 rcsB rcsB rcsC rcsC phoB phoB W5S_3420 W5S_3420 W5S_3687 W5S_3687 W5S_4012 W5S_4012 pmrA pmrA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_4717Two-component system response regulator QseB. (220 aa)
W5S_4234Transcriptional regulatory protein OmpR. (239 aa)
W5S_4246Two component transcriptional regulator, AraC family. (350 aa)
ntrCDNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa)
W5S_0044Transcriptional regulatory protein. (240 aa)
W5S_0130Transcriptional regulatory protein CpxR. (232 aa)
W5S_0321Aerobic respiration control sensor protein. (789 aa)
W5S_0781Two component heavy metal response transcriptional regulator, winged helix family. (242 aa)
W5S_0788Pilus assembly protein cpaE. (399 aa)
W5S_0901Transcriptional regulatory protein CpxR. (226 aa)
W5S_1028Two-component system response regulator YehT. (238 aa)
W5S_1136Two-component system response regulator GlrR. (445 aa)
W5S_1213Two-component system response regulator BaeR. (242 aa)
W5S_1423Nitrate-and nitrite-responsive positive regulator. (429 aa)
W5S_1457Two-component system response regulator UvrY. (218 aa)
W5S_1552Capsular synthesis regulator component B. (201 aa)
W5S_1553Sensor histidine kinase/response regulator EvgS. (903 aa)
W5S_1567Capsular synthesis regulator component B. (227 aa)
W5S_1689Transcriptional regulatory protein UhpA. (209 aa)
W5S_1751Response regulator receiver modulated CheW protein. (321 aa)
cheBProtein-glutamate methylesterase/protein-glutamine glutaminase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (350 aa)
W5S_1771Chemotaxis protein CheY. (129 aa)
dpiATranscriptional regulatory protein. (233 aa)
W5S_2096Two-component system response regulator PhoP. (229 aa)
W5S_2112Sensory transduction protein lytT. (249 aa)
rssBRegulator of RpoS; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (338 aa)
W5S_2543Nitrate/nitrite response regulator protein NarL. (216 aa)
W5S_2555Two-component system response regulator RstA. (245 aa)
W5S_2691Nitrate/nitrite response regulator protein NarP. (210 aa)
W5S_3108Two-component system response regulator for high-affinity potassium transport system. (245 aa)
rcsBTranscriptional regulatory protein RcsB; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (216 aa)
rcsCSensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (928 aa)
phoBPhosphate regulon transcriptional regulatory protein PhoB. (229 aa)
W5S_3420Ornithine decarboxylase, inducible. (717 aa)
W5S_3687Histidine kinase. (928 aa)
W5S_4012Two-component system response regulator ArcA. (238 aa)
pmrATranscriptional regulatory protein PmrA; Member of the two-component regulatory system PmrB/PmrA involved in regulation of virulence. Unphosphorylated PmrA represses extracellular enzyme genes. Phosphorylation of PmrA by PmrB relieves such repression, which leads to activation of extracellular enzyme genes. Phosphorylated PmrA seems to repress expression of the pmrCAB operon. (222 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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