STRINGSTRING
W5S_3249 W5S_3249 W5S_0505 W5S_0505 W5S_1123 W5S_1123 W5S_1928 W5S_1928 W5S_3250 W5S_3250 W5S_1929 W5S_1929 msbA msbA W5S_2130 W5S_2130 W5S_2892 W5S_2892 W5S_3316 W5S_3316
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_3249Multidrug resistance-like ATP-binding protein mdlB. (601 aa)
W5S_0505Subtilin transport ATP-binding protein spaT. (596 aa)
W5S_1123Type I secretion system permease/ATPase. (738 aa)
W5S_1928Transport ATP-binding protein CydC. (579 aa)
W5S_3250Multidrug resistance, ATP-binding protein mdlA. (589 aa)
W5S_1929ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD. (588 aa)
msbALipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (597 aa)
W5S_2130ABC multidrug efflux transporter, fused ATPase and inner membrane subunit. (572 aa)
W5S_2892Type I secretion system ATPase. (575 aa)
W5S_3316Toxin secretion ATP-binding protein. (712 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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