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budA budA W5S_0742 W5S_0742 W5S_0824 W5S_0824 W5S_0894 W5S_0894 W5S_0923 W5S_0923 grcA grcA fadJ fadJ pflB pflB W5S_2228 W5S_2228 W5S_2518 W5S_2518 W5S_2519 W5S_2519 W5S_2596 W5S_2596 sdhB sdhB W5S_3093 W5S_3093 W5S_3094 W5S_3094 W5S_3095 W5S_3095 W5S_3167 W5S_3167 W5S_3168 W5S_3168 W5S_3169 W5S_3169 W5S_3597 W5S_3597 cutC-2 cutC-2 W5S_3932 W5S_3932 W5S_3933 W5S_3933 W5S_3952 W5S_3952 W5S_3953 W5S_3953 W5S_4092 W5S_4092 W5S_4093 W5S_4093 frdC frdC frdD frdD W5S_4251 W5S_4251 W5S_4383 W5S_4383 W5S_4384 W5S_4384 W5S_4403 W5S_4403
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
budAAlpha-acetolactate decarboxylase; Belongs to the alpha-acetolactate decarboxylase family. (260 aa)
W5S_0742Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. (559 aa)
W5S_0824Pyruvate-flavodoxin oxidoreductase. (1177 aa)
W5S_0894Dyp-type peroxidase family protein. (299 aa)
W5S_0923Flavocytochrome c. (509 aa)
grcAAutonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. (127 aa)
fadJEnoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (727 aa)
pflBFormate C-acetyltransferase. (760 aa)
W5S_2228Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (892 aa)
W5S_2518Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa)
W5S_25194-aminobutyrate--2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (421 aa)
W5S_2596Urocanate reductase. (957 aa)
sdhBSuccinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (238 aa)
W5S_3093Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (588 aa)
W5S_3094Succinate dehydrogenase hydrophobic membrane anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). (115 aa)
W5S_3095Succinate dehydrogenase, cytochrome b556 subunit. (125 aa)
W5S_3167Acetate CoA-transferase alpha subunit. (218 aa)
W5S_31683-oxoacid CoA-transferase, B subunit. (215 aa)
W5S_3169Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
W5S_3597Pyruvate formate-lyase. (826 aa)
cutC-2Choline trimethylamine-lyase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily. (834 aa)
W5S_3932Acetolactate synthase isozyme III small subunit. (163 aa)
W5S_3933Acetolactate synthase. (572 aa)
W5S_3952Acetolactate synthase. (554 aa)
W5S_3953Acetolactate synthase, isozyme I, small subunit. (97 aa)
W5S_4092Fumarate reductase flavoprotein subunit. (598 aa)
W5S_4093Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (245 aa)
frdCFumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (132 aa)
frdDFumarate reductase subunit D; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (118 aa)
W5S_4251Glycyl radical protein. (847 aa)
W5S_4383Acetolactate synthase, isozyme II, small subunit. (86 aa)
W5S_4384Acetolactate synthase. (548 aa)
W5S_4403Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (729 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
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