STRINGSTRING
W5S_0318 W5S_0318 W5S_0319 W5S_0319 W5S_0376 W5S_0376 W5S_0379 W5S_0379 W5S_0753 W5S_0753 W5S_0860 W5S_0860 W5S_1059 W5S_1059 W5S_1424 W5S_1424 W5S_1425 W5S_1425 W5S_1426 W5S_1426 W5S_1427 W5S_1427 W5S_0257 W5S_0257 W5S_1428 W5S_1428 W5S_1439 W5S_1439 lacY lacY W5S_1739 W5S_1739 hcp hcp W5S_2113 W5S_2113 narI narI narH narH W5S_2539 W5S_2539 W5S_2541 W5S_2541 W5S_2550 W5S_2550 W5S_2607 W5S_2607 napA napA napB napB W5S_2714 W5S_2714 nrfA nrfA W5S_3479 W5S_3479 W5S_4122 W5S_4122 W5S_4163 W5S_4163 W5S_4204 W5S_4204 nirD nirD nfuA nfuA W5S_4492 W5S_4492 W5S_4662 W5S_4662 glnA glnA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5S_0318Glutamate synthase (NADPH), small subunit. (472 aa)
W5S_0319Glutamate synthase (NADPH) large subunit. (1486 aa)
W5S_0376YrdF. (109 aa)
W5S_0379Putative ribonuclease inhibitor. (108 aa)
W5S_0753Lactose permease. (420 aa)
W5S_0860Uncharacterized protein. (100 aa)
W5S_1059Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (213 aa)
W5S_1424Nitrate transporter component, nrtA. (419 aa)
W5S_1425Nitrate ABC transporter, inner membrane subunit. (304 aa)
W5S_1426Nitrate ABC transporter, ATPase subunits C and D. (264 aa)
W5S_1427Nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (1396 aa)
W5S_0257Carbonic anhydrase. (244 aa)
W5S_1428Nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (902 aa)
W5S_1439Antisigma-factor antagonist, STAS. (499 aa)
lacYLactose permease. (418 aa)
W5S_1739Multidrug resistance protein mdtH. (415 aa)
hcpHydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (550 aa)
W5S_2113Oxalate/formate antiporter. (407 aa)
narIRespiratory nitrate reductase, gamma subunit. (229 aa)
narHNitrate reductase, beta subunit. (526 aa)
W5S_2539Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1253 aa)
W5S_2541Nitrate/nitrite transporter. (462 aa)
W5S_2550C4-dicarboxylic acid transporter DauA. (567 aa)
W5S_2607Oligosaccharide:H+ symporter. (410 aa)
napAPeriplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (828 aa)
napBPeriplasmic nitrate reductase, electron transfer subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (145 aa)
W5S_2714Cytochrome c nitrite reductase, pentaheme subunit. (189 aa)
nrfACytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family. (472 aa)
W5S_3479Antisigma-factor antagonist, STAS. (492 aa)
W5S_4122Gamma carbonic anhydrase family protein. (182 aa)
W5S_4163Bacterioferritin-associated ferredoxin. (64 aa)
W5S_4204Nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (850 aa)
nirDNitrite reductase [NAD(P)H], small subunit. (122 aa)
nfuAFe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. (191 aa)
W5S_4492Ribonuclease inhibitor YrdF. (96 aa)
W5S_4662Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
glnAGlutamine synthetase. (469 aa)
Your Current Organism:
Pectobacterium parmentieri
NCBI taxonomy Id: 1905730
Other names: CFBP 8475, LMG 29774, LMG:29774, P. parmentieri, Pectobacterium parmentieri Khayi et al. 2016, Pectobacterium sp. SCC3193, strain RNS 08-42-1A, strain RNS 08.42.1A
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.