STRINGSTRING
CC_0116 CC_0116 CC_0122 CC_0122 CC_0123 CC_0123 CC_0124 CC_0124 CC_0298 CC_0298 CC_0300 CC_0300 CC_0387 CC_0387 CC_0658 CC_0658 CC_0889 CC_0889 CC_0940 CC_0940 CC_0985 CC_0985 CC_1056 CC_1056 CC_1122 CC_1122 CC_1556 CC_1556 CC_1971 CC_1971 CC_1972 CC_1972 CC_1973 CC_1973 CC_2539 CC_2539 CC_2672 CC_2672 CC_3032 CC_3032 CC_3357 CC_3357
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CC_0116Hypothetical protein; Identified by Glimmer2; putative. (1096 aa)
CC_0122Hypothetical protein; Identified by Glimmer2; putative. (152 aa)
CC_0123Hypothetical protein; Identified by Glimmer2; putative. (136 aa)
CC_01243-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)
CC_0298Conserved hypothetical protein; Identified by Glimmer2; putative. (197 aa)
CC_0300Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM. (428 aa)
CC_0387Hypothetical protein; Identified by Glimmer2; putative. (185 aa)
CC_0658Conserved hypothetical protein; Identified by Glimmer2; putative. (544 aa)
CC_0889Leucine aminopeptidase-related protein; Identified by match to protein family HMM. (468 aa)
CC_0940Acylase, putative; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative. (633 aa)
CC_0985Hypothetical protein; Identified by Glimmer2; putative. (949 aa)
CC_1056Hypothetical protein; Identified by Glimmer2; putative. (613 aa)
CC_1122Identified by match to PFAM protein family HMM PF01804. (725 aa)
CC_1556Conserved hypothetical protein; Identified by Glimmer2; putative. (599 aa)
CC_1971Conserved hypothetical protein; Identified by Glimmer2; putative. (210 aa)
CC_1972Conserved hypothetical protein; Identified by Glimmer2; putative. (483 aa)
CC_1973Conserved hypothetical protein; Identified by Glimmer2; putative. (450 aa)
CC_2539Conserved hypothetical protein; Identified by Glimmer2; putative. (618 aa)
CC_2672Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM. (429 aa)
CC_3032Peptidase, M20/M25/M40 family; Identified by match to protein family HMM. (412 aa)
CC_3357Hypothetical protein; Identified by Glimmer2; putative. (834 aa)
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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