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| | CC_0109 | ATP-dependent protease La domain protein; Identified by match to PFAM protein family HMM PF02190. (225 aa) |
| | dnaQ | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (237 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (91 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity). (490 aa) |
| | rpsO | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (1037 aa) |
| | CC_0119 | TPR domain protein; Identified by match to protein family HMM. (747 aa) |
| | recF | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity). (387 aa) |
| | CC_0268 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (102 aa) |
| | parB | Chromosome partitioning protein ParB; Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication; Belongs to the ParB family. (294 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (241 aa) |
| | CC_3718 | TPR domain protein; Identified by match to protein family HMM. (596 aa) |
| | CC_3711 | Hypothetical protein; Identified by Glimmer2; putative. (168 aa) |
| | CC_3683 | Hypothetical protein; Identified by Glimmer2; putative. (143 aa) |
| | rpsP | Ribosomal protein S16; Identified by match to TIGR protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (165 aa) |
| | hpf | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (208 aa) |
| | RpsA | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (565 aa) |
| | ihfB | Integration host factor beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (96 aa) |
| | CC_3563 | Conserved hypothetical protein; Identified by Glimmer2; putative. (231 aa) |
| | amgK | Conserved hypothetical protein; Sugar kinase that catalyzes the ATP-dependent phosphorylation of N-acetylmuramate (MurNAc) and N-acetylglucosamine (GlcNAc) at its C1 hydroxyl group, leading to MurNAc alpha-1P and GlcNAc alpha-1P, respectively (By similarity). Is likely involved in peptidoglycan recycling as part of a cell wall recycling pathway that bypasses de novo biosynthesis of the peptidoglycan precursor UDP-MurNAc. Is able to complement the fosfomycin sensitivity phenotype of a P.putida mutant lacking amgK. (363 aa) |
| | cobB | Transcriptional regulator, Sir2 family; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. (238 aa) |
| | CC_3465 | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM. (615 aa) |
| | CC_3456 | Conserved hypothetical protein; Identified by Glimmer2; putative. (306 aa) |
| | CC_3441 | Identified by match to protein family HMM. (438 aa) |
| | CC_3418 | Conserved hypothetical protein; Identified by Glimmer2; putative. (504 aa) |
| | rpmJ | Ribosomal protein L36; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL36 family. (41 aa) |
| | rpsU | Ribosomal protein S21; Identified by match to TIGR protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (87 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (76 aa) |
| | CC_3231 | Hypothetical protein; Identified by Glimmer2; putative. (270 aa) |
| | cpoB | Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (284 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa) |
| | CC_3121 | Phytoene dehydrogenase-related protein; Identified by match to PFAM protein family HMM PF02032. (543 aa) |
| | CC_3092 | Hypothetical protein; Identified by Glimmer2; putative. (134 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (643 aa) |
| | CC_3021 | Cobalamin biosynthesis protein; Similar to GB:M62869 SP:P29933 PID:151168 PID:1926457; identified by sequence similarity; putative. (336 aa) |
| | CC_2965 | Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0339 family. (59 aa) |
| | CC_2938 | TPR domain protein; Identified by match to protein family HMM. (295 aa) |
| | CC_2868 | neuB protein, putative; Similar to GB:U05248 PID:454081; identified by sequence similarity; putative. (356 aa) |
| | CC_2818 | TPR domain protein; Identified by match to protein family HMM. (526 aa) |
| | CC_2779 | Hypothetical protein; Identified by Glimmer2; putative. (168 aa) |
| | ftsZ | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (508 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa) |
| | CC_2469 | Hypothetical protein; Identified by Glimmer2; putative. (122 aa) |
| | rpmG | Ribosomal protein L33; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | CC_2448 | Conserved hypothetical protein; Identified by Glimmer2; putative. (401 aa) |
| | hfsA | HfsA; Identified by Glimmer2; putative. (501 aa) |
| | cutC | Conserved hypothetical protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (245 aa) |
| | CC_2331 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (92 aa) |
| | CC_2272 | Identified by match to protein family HMM. (241 aa) |
| | CC_2058 | Hypothetical protein; Identified by Glimmer2; putative. (958 aa) |
| | edd | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (602 aa) |
| | CC_2031 | TPR domain protein; Identified by match to protein family HMM. (184 aa) |
| | CC_1983 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (568 aa) |
| | hup | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. (92 aa) |
| | rpsB | Ribosomal protein S2; Identified by match to protein family HMM; Belongs to the universal ribosomal protein uS2 family. (268 aa) |
| | CC_1863 | Hypothetical protein; Identified by Glimmer2; putative. (129 aa) |
| | CC_1848 | Hypothetical protein; Identified by Glimmer2; putative. (383 aa) |
| | CC_1847 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. (517 aa) |
| | rpmF | Ribosomal protein L32; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | CC_1711 | DnaA-related protein; Similar to SP:P35887 GB:U01667 PID:403535; identified by sequence similarity; putative. (230 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (126 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (92 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (194 aa) |
| | CC_1665 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (507 aa) |
| | guaB | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (487 aa) |
| | recO | Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination. (250 aa) |
| | CC_1523 | Exonuclease; Identified by match to PFAM protein family HMM PF00929. (202 aa) |
| | CC_1514 | Hypothetical protein; Identified by Glimmer2; putative. (99 aa) |
| | flbA | Flagellin modification protein FlmG; Identified by match to protein family HMM. (596 aa) |
| | rpsI | Ribosomal protein S9; Identified by match to protein family HMM; Belongs to the universal ribosomal protein uS9 family. (157 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (157 aa) |
| | ihfA | Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (100 aa) |
| | CC_1356 | Transcriptional regulator; Similar to PID:642657 SP:P55323; identified by sequence similarity; putative. (171 aa) |
| | CC_1283 | ATPase, AAA family; Identified by match to protein family HMM. (433 aa) |
| | rplQ | Ribosomal protein L17; Identified by match to TIGR protein family HMM TIGR00059. (137 aa) |
| | rpsK | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (161 aa) |
| | rpmD | Ribosomal protein L30; Identified by match to protein family HMM. (61 aa) |
| | rpsE | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (201 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (185 aa) |
| | rplX | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (104 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (79 aa) |
| | rpmC | Ribosomal protein L29; Identified by match to TIGR protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. (63 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (143 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (250 aa) |
| | rplV | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (126 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (279 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (98 aa) |
| | rplD | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (212 aa) |
| | rplC | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (267 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | CC_1201 | Class II aldolase/adducin domain protein; Identified by match to protein family HMM. (300 aa) |
| | CC_1115 | Conserved hypothetical protein; Identified by Glimmer2; putative. (280 aa) |
| | CC_1107 | TPR domain protein; Identified by match to protein family HMM. (672 aa) |
| | CC_1068 | Hypothetical protein; Identified by Glimmer2; putative. (504 aa) |
| | rpmI | Ribosomal protein L35; Identified by match to TIGR protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | CC_0949 | Transcriptional regulator; Similar to GB:M65201 GB:X82941 PID:142275 PID:599613 SP:P55324; identified by sequence similarity; putative. (181 aa) |
| | CC_0933 | Transcriptional regulator; Similar to GB:M65201 GB:X82941 PID:142275 PID:599613 SP:P55324; identified by sequence similarity; putative. (191 aa) |
| | CC_0835 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. (476 aa) |
| | CC_0771 | Esterase, putative; Similar to PID:2088525; identified by sequence similarity; putative. (380 aa) |
| | rpmH | Ribosomal protein L34; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | CC_0729 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa) |
| | rpmB | Ribosomal protein L28; Identified by match to TIGR protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (99 aa) |
| | CC_0632 | Hypothetical protein; Identified by Glimmer2; putative. (350 aa) |
| | CC_0631 | Hypothetical protein; Identified by Glimmer2; putative. (394 aa) |
| | CC_0622 | Hypothetical protein; Identified by Glimmer2; putative. (347 aa) |
| | CC_0601 | Hypothetical protein; Identified by Glimmer2; putative. (1004 aa) |
| | CC_0557 | Hypothetical protein; Identified by Glimmer2; putative. (316 aa) |
| | CC_0498 | Hypothetical protein; Identified by Glimmer2; putative. (296 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (127 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (172 aa) |
| | rplY | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (197 aa) |
| | CC_0483 | Hypothetical protein; Identified by Glimmer2; putative. (249 aa) |
| | CC_0401 | Hypothetical protein; Identified by Glimmer2; putative. (127 aa) |
| | ccrMIM | Modification methylase CcrMI; This methylase recognizes the double-stranded sequence GANTC and causes specific methylation on A-2 on both strands. Ccrm-mediated methylation has important cellular functions. Appears to contribute to the accurate cell-cycle control of DNA replication and cellular morphology; Belongs to the N(4)/N(6)-methyltransferase family. (358 aa) |
| | smc | Smc protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1147 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (719 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (171 aa) |
| | rpmA | Ribosomal protein L27; Identified by match to TIGR protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. (89 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (152 aa) |
