(21 nodes) Acyl-CoA dehydrogenase/oxidase C-terminal network (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC_0080	Identified by match to PFAM protein family HMM PF00441. (597 aa)
	CC_0079	acyl-CoA dehydrogenase, long-chain specific; Identified by match to PFAM protein family HMM PF00441. (391 aa)
	CC_3454	Identified by match to PFAM protein family HMM PF00441. (435 aa)
	CC_3393	Identified by match to PFAM protein family HMM PF00441. (603 aa)
	CC_3087	acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441. (564 aa)
	CC_2479	Identified by match to PFAM protein family HMM PF00441. (344 aa)
	CC_2478	Identified by match to PFAM protein family HMM PF00441. (407 aa)
	CC_2328	Identified by match to PFAM protein family HMM PF00441. (387 aa)
	CC_2172	isovaleryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441. (378 aa)
	CC_2131	Identified by match to PFAM protein family HMM PF00441. (403 aa)
	CC_2050	Identified by match to PFAM protein family HMM PF00441. (377 aa)
	CC_1807	Identified by match to PFAM protein family HMM PF00441. (382 aa)
	CC_2049	Identified by match to PFAM protein family HMM PF00441. (401 aa)
	CC_1806	Identified by match to PFAM protein family HMM PF00441. (355 aa)
	CC_1798	acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441. (381 aa)
	CC_1350	acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441. (379 aa)
	CC_1311	Identified by match to PFAM protein family HMM PF00441. (401 aa)
	CC_1310	Identified by match to PFAM protein family HMM PF00441. (404 aa)
	CC_1110	Identified by match to PFAM protein family HMM PF00441. (387 aa)
	CC_0690	Identified by match to PFAM protein family HMM PF00441. (435 aa)
	CC_0427	acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441. (382 aa)

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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node1	node2	node1 annotation	node2 annotation	score
CC_0079	CC_0080	acyl-CoA dehydrogenase, long-chain specific; Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.811
CC_0080	CC_0079	Identified by match to PFAM protein family HMM PF00441.	acyl-CoA dehydrogenase, long-chain specific; Identified by match to PFAM protein family HMM PF00441.	0.811
CC_0427	CC_1798	acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.	acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.	0.900
CC_0690	CC_1807	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.471
CC_1310	CC_1311	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.926
CC_1310	CC_1807	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.916
CC_1310	CC_2050	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.929
CC_1310	CC_2479	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.953
CC_1311	CC_1310	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.926
CC_1311	CC_2049	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.843
CC_1311	CC_2131	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.902
CC_1311	CC_2478	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.886
CC_1798	CC_0427	acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.	acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.	0.900
CC_1806	CC_1807	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.981
CC_1806	CC_2050	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.926
CC_1806	CC_2479	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.928
CC_1807	CC_0690	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.471
CC_1807	CC_1310	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.916
CC_1807	CC_1806	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.981
CC_1807	CC_2049	Identified by match to PFAM protein family HMM PF00441.	Identified by match to PFAM protein family HMM PF00441.	0.923