STRINGSTRING
CC_1355 CC_1355 CC_1382 CC_1382 CC_1860 CC_1860 CC_2455 CC_2455 hisC2 hisC2 CC_3168 CC_3168 CC_0939 CC_0939 per per CC_1071 CC_1071
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CC_13555-aminolevulinic acid synthase; Identified by match to protein family HMM. (408 aa)
CC_1382Aminotransferase, class I; Identified by match to protein family HMM. (406 aa)
CC_1860Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (408 aa)
CC_2455Aminotransferase, class I; Identified by match to protein family HMM. (381 aa)
hisC2Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (378 aa)
CC_3168Methionine-gamma-lyase; Identified by match to PFAM protein family HMM PF01053. (401 aa)
CC_0939Isopenicillin N epimerase, putative; Identified by match to protein family HMM. (368 aa)
perPerosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface. (371 aa)
CC_1071Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM. (409 aa)
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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