(8 nodes) Limonene and pinene degradation network (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC_0076	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725. (709 aa)
	CC_0353	Identified by match to PFAM protein family HMM PF00378. (286 aa)
	CC_0419	Aldehyde dehydrogenase; Identified by match to protein family HMM. (479 aa)
	CC_1216	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family. (507 aa)
	CC_1352	Identified by match to PFAM protein family HMM PF00378. (350 aa)
	CC_1723	Identified by match to PFAM protein family HMM PF00378. (256 aa)
	CC_1814	Identified by match to PFAM protein family HMM PF00378. (275 aa)
	CC_2961	Conserved hypothetical protein; Identified by Glimmer2; putative. (129 aa)

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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node1	node2	node1 annotation	node2 annotation	score
CC_0076	CC_0353	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.951
CC_0076	CC_0419	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Aldehyde dehydrogenase; Identified by match to protein family HMM.	0.918
CC_0076	CC_1216	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.919
CC_0076	CC_1352	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.925
CC_0076	CC_1723	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.928
CC_0076	CC_1814	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.948
CC_0353	CC_0076	Identified by match to PFAM protein family HMM PF00378.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.951
CC_0353	CC_1352	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.619
CC_0353	CC_1723	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.537
CC_0419	CC_0076	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.918
CC_0419	CC_1216	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.916
CC_1216	CC_0076	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.919
CC_1216	CC_0419	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Identified by match to protein family HMM.	0.916
CC_1352	CC_0076	Identified by match to PFAM protein family HMM PF00378.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.925
CC_1352	CC_0353	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.619
CC_1352	CC_1723	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.765
CC_1352	CC_1814	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.640
CC_1723	CC_0076	Identified by match to PFAM protein family HMM PF00378.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.928
CC_1723	CC_0353	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.537
CC_1723	CC_1352	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.765