(8 nodes) Oxidoreductase activity, acting on the CH-NH2 group of donors network (Jeongeupia sp. USM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOX99075.1	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (526 aa)
	AOX99351.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1581 aa)
	AOY00281.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
	dadA	Amino acid dehydrogenase; Oxidative deamination of D-amino acids. (410 aa)
	dadA-2	D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (416 aa)
	AOY01490.1	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1547 aa)
	AOY01492.1	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (1482 aa)
	AOY02047.1	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)

Your Current Organism:

Jeongeupia sp. USM3

NCBI taxonomy Id: 1906741
Other names: J. sp. USM3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOX99351.1	AOY00281.1	BJP62_02105	BJP62_07380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.916
AOX99351.1	AOY01490.1	BJP62_02105	BJP62_14115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOX99351.1	AOY01492.1	BJP62_02105	BJP62_14125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOY00281.1	AOX99351.1	BJP62_07380	BJP62_02105	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AOY00281.1	AOY01490.1	BJP62_07380	BJP62_14115	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOY00281.1	AOY01492.1	BJP62_07380	BJP62_14125	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOY01490.1	AOX99351.1	BJP62_14115	BJP62_02105	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOY01490.1	AOY00281.1	BJP62_14115	BJP62_07380	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.999
AOY01490.1	AOY01492.1	BJP62_14115	BJP62_14125	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOY01490.1	AOY02047.1	BJP62_14115	BJP62_17330	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AOY01490.1	dadA	BJP62_14115	BJP62_11260	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Oxidative deamination of D-amino acids.	0.625
AOY01490.1	dadA-2	BJP62_14115	BJP62_12180	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.	0.625
AOY01492.1	AOX99351.1	BJP62_14125	BJP62_02105	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOY01492.1	AOY00281.1	BJP62_14125	BJP62_07380	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.999
AOY01492.1	AOY01490.1	BJP62_14125	BJP62_14115	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOY01492.1	AOY02047.1	BJP62_14125	BJP62_17330	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AOY01492.1	dadA	BJP62_14125	BJP62_11260	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Oxidative deamination of D-amino acids.	0.625
AOY01492.1	dadA-2	BJP62_14125	BJP62_12180	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.	0.625
AOY02047.1	AOY01490.1	BJP62_17330	BJP62_14115	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AOY02047.1	AOY01492.1	BJP62_17330	BJP62_14125	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625