(7 nodes) HPT domain superfamily network (Jeongeupia sp. USM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOX99959.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
	AOY00029.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (881 aa)
	AOY01232.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1903 aa)
	AOX99024.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (117 aa)
	AOX99057.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1086 aa)
	AOX99062.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1101 aa)
	AOX99416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (914 aa)

Your Current Organism:

Jeongeupia sp. USM3

NCBI taxonomy Id: 1906741
Other names: J. sp. USM3

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOX99024.1	AOX99057.1	BJP62_00280	BJP62_00470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99024.1	AOX99062.1	BJP62_00280	BJP62_00500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99024.1	AOX99416.1	BJP62_00280	BJP62_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99024.1	AOY00029.1	BJP62_00280	BJP62_05950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.894
AOX99024.1	AOY01232.1	BJP62_00280	BJP62_12725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AOX99057.1	AOX99024.1	BJP62_00470	BJP62_00280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99057.1	AOX99062.1	BJP62_00470	BJP62_00500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99057.1	AOX99416.1	BJP62_00470	BJP62_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99057.1	AOX99959.1	BJP62_00470	BJP62_05480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AOX99057.1	AOY00029.1	BJP62_00470	BJP62_05950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99057.1	AOY01232.1	BJP62_00470	BJP62_12725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOX99062.1	AOX99024.1	BJP62_00500	BJP62_00280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99062.1	AOX99057.1	BJP62_00500	BJP62_00470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99062.1	AOX99416.1	BJP62_00500	BJP62_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99062.1	AOX99959.1	BJP62_00500	BJP62_05480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AOX99062.1	AOY00029.1	BJP62_00500	BJP62_05950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99062.1	AOY01232.1	BJP62_00500	BJP62_12725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOX99416.1	AOX99024.1	BJP62_02450	BJP62_00280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AOX99416.1	AOX99057.1	BJP62_02450	BJP62_00470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AOX99416.1	AOX99062.1	BJP62_02450	BJP62_00500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999