(16 nodes) WD40-repeat-containing domain superfamily network (Nonomuraea sp. ATCC 55076)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQZ68703.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (821 aa)
	AQZ69460.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1207 aa)
	AQZ61225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1838 aa)
	AQZ61730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1327 aa)
	AQZ62092.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1302 aa)
	AQZ62416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (973 aa)
	AQZ62939.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (735 aa)
	AQZ62998.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1212 aa)
	AQZ63421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (613 aa)
	AQZ63938.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1095 aa)
	AQZ63978.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (747 aa)
	AQZ64728.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1853 aa)
	AQZ65508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1490 aa)
	AQZ67102.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (472 aa)
	AQZ67405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (435 aa)
	AQZ67462.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (690 aa)

Your Current Organism:

Nonomuraea sp. ATCC 55076

NCBI taxonomy Id: 1909395
Other names: N. sp. ATCC 55076

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ61225.1	AQZ63421.1	BKM31_06755	BKM31_19880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
AQZ61225.1	AQZ63938.1	BKM31_06755	BKM31_22950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AQZ61225.1	AQZ64728.1	BKM31_06755	BKM31_27640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AQZ61225.1	AQZ67405.1	BKM31_06755	BKM31_43405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AQZ62939.1	AQZ63421.1	BKM31_17035	BKM31_19880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AQZ62939.1	AQZ63938.1	BKM31_17035	BKM31_22950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AQZ63421.1	AQZ61225.1	BKM31_19880	BKM31_06755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
AQZ63421.1	AQZ62939.1	BKM31_19880	BKM31_17035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AQZ63421.1	AQZ63938.1	BKM31_19880	BKM31_22950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AQZ63421.1	AQZ67102.1	BKM31_19880	BKM31_41665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
AQZ63938.1	AQZ61225.1	BKM31_22950	BKM31_06755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AQZ63938.1	AQZ62939.1	BKM31_22950	BKM31_17035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AQZ63938.1	AQZ63421.1	BKM31_22950	BKM31_19880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AQZ63938.1	AQZ67102.1	BKM31_22950	BKM31_41665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.770
AQZ63938.1	AQZ67405.1	BKM31_22950	BKM31_43405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
AQZ64728.1	AQZ61225.1	BKM31_27640	BKM31_06755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.520
AQZ64728.1	AQZ67405.1	BKM31_27640	BKM31_43405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.447
AQZ67102.1	AQZ63421.1	BKM31_41665	BKM31_19880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
AQZ67102.1	AQZ63938.1	BKM31_41665	BKM31_22950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.770
AQZ67102.1	AQZ67405.1	BKM31_41665	BKM31_43405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.762