(6 nodes) Mixed, incl. RmlD substrate binding domain, and UDP binding domain network (Marinilactibacillus sp. 15R)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	API88459.1	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (287 aa)
	API89844.1	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	API89845.1	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	API89846.1	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	API89847.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (622 aa)
	API89850.1	UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)

Your Current Organism:

Marinilactibacillus sp. 15R

NCBI taxonomy Id: 1911586
Other names: M. sp. 15R

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API88459.1	API89845.1	BKP56_03710	BKP56_11490	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
API88459.1	API89846.1	BKP56_03710	BKP56_11495	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
API88459.1	API89847.1	BKP56_03710	BKP56_11500	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.863
API89844.1	API89845.1	BKP56_11485	BKP56_11490	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
API89844.1	API89846.1	BKP56_11485	BKP56_11495	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
API89844.1	API89847.1	BKP56_11485	BKP56_11500	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.839
API89844.1	API89850.1	BKP56_11485	BKP56_11515	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
API89845.1	API88459.1	BKP56_11490	BKP56_03710	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.720
API89845.1	API89844.1	BKP56_11490	BKP56_11485	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
API89845.1	API89846.1	BKP56_11490	BKP56_11495	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
API89845.1	API89847.1	BKP56_11490	BKP56_11500	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
API89845.1	API89850.1	BKP56_11490	BKP56_11515	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
API89846.1	API88459.1	BKP56_11495	BKP56_03710	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.693
API89846.1	API89844.1	BKP56_11495	BKP56_11485	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
API89846.1	API89845.1	BKP56_11495	BKP56_11490	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
API89846.1	API89847.1	BKP56_11495	BKP56_11500	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
API89846.1	API89850.1	BKP56_11495	BKP56_11515	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
API89847.1	API88459.1	BKP56_11500	BKP56_03710	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.863
API89847.1	API89844.1	BKP56_11500	BKP56_11485	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyltransferase family 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
API89847.1	API89845.1	BKP56_11500	BKP56_11490	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862