(12 nodes) Phosphotransferase system, EIIB component, type 2 network (Marinilactibacillus sp. 15R)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	API88030.1	PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	API87840.1	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	API87843.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (674 aa)
	API90194.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)
	API87924.1	PTS mannitol transporter subunit IIBC; CmtA with CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	API88203.1	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)
	API88298.1	PTS fructose transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	API89528.1	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
	API89694.1	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
	API89696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
	API89796.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
	API90073.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)

Your Current Organism:

Marinilactibacillus sp. 15R

NCBI taxonomy Id: 1911586
Other names: M. sp. 15R

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API87840.1	API87843.1	BKP56_00110	BKP56_00125	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
API87840.1	API88030.1	BKP56_00110	BKP56_01190	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
API87840.1	API88203.1	BKP56_00110	BKP56_02310	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
API87840.1	API89528.1	BKP56_00110	BKP56_09795	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
API87840.1	API89694.1	BKP56_00110	BKP56_10685	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
API87840.1	API89696.1	BKP56_00110	BKP56_10695	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
API87840.1	API89796.1	BKP56_00110	BKP56_11225	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
API87840.1	API90073.1	BKP56_00110	BKP56_12765	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
API87840.1	API90194.1	BKP56_00110	BKP56_00600	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
API87843.1	API87840.1	BKP56_00125	BKP56_00110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
API87843.1	API87924.1	BKP56_00125	BKP56_00605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS mannitol transporter subunit IIBC; CmtA with CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
API87843.1	API88030.1	BKP56_00125	BKP56_01190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
API87843.1	API88203.1	BKP56_00125	BKP56_02310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
API87843.1	API88298.1	BKP56_00125	BKP56_02810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS fructose transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
API87843.1	API89528.1	BKP56_00125	BKP56_09795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
API87843.1	API89694.1	BKP56_00125	BKP56_10685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
API87843.1	API89696.1	BKP56_00125	BKP56_10695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
API87843.1	API89796.1	BKP56_00125	BKP56_11225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
API87843.1	API90073.1	BKP56_00125	BKP56_12765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
API87843.1	API90194.1	BKP56_00125	BKP56_00600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780