(18 nodes) Mixed, incl. Type 1 protein exporter, and Pyridoxine biosynthesis network (Sphingopyxis sp. LPB0140)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APG62076.1	C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	APG62077.1	TIGR01244 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	APG62078.1	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	APG62080.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	APG63546.1	AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	acpS	holo-ACP synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. (134 aa)
	pdxJ	Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. (245 aa)
	APG62085.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (64 aa)
	APG63566.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	APG63263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (262 aa)
	APG63264.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (147 aa)
	APG63820.1	SLC13 family permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	APG63265.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (211 aa)
	APG63268.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	APG63269.1	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	pdxH	Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (202 aa)
	fieF	Divalent metal cation transporter FieF; Member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (290 aa)
	APG63270.1	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)

Your Current Organism:

Sphingopyxis sp. LPB0140

NCBI taxonomy Id: 1913578
Other names: S. sp. LPB0140

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APG62076.1	APG62077.1	LPB140_03780	LPB140_03785	C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR01244 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
APG62076.1	APG62078.1	LPB140_03780	LPB140_03790	C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APG62077.1	APG62076.1	LPB140_03785	LPB140_03780	TIGR01244 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
APG62077.1	APG62078.1	LPB140_03785	LPB140_03790	TIGR01244 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
APG62078.1	APG62076.1	LPB140_03790	LPB140_03780	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APG62078.1	APG62077.1	LPB140_03790	LPB140_03785	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR01244 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
APG62078.1	APG62080.1	LPB140_03790	LPB140_03800	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
APG62078.1	APG63546.1	LPB140_03790	LPB140_03805	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
APG62078.1	APG63566.1	LPB140_03790	LPB140_04210	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
APG62080.1	APG62078.1	LPB140_03800	LPB140_03790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
APG62080.1	APG63546.1	LPB140_03800	LPB140_03805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
APG62080.1	acpS	LPB140_03800	LPB140_03815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	holo-ACP synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.	0.461
APG62080.1	pdxJ	LPB140_03800	LPB140_03820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.	0.461
APG62085.1	acpS	LPB140_03830	LPB140_03815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	holo-ACP synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.	0.557
APG62085.1	pdxJ	LPB140_03830	LPB140_03820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.	0.557
APG63263.1	APG63264.1	LPB140_11240	LPB140_11245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
APG63264.1	APG63263.1	LPB140_11245	LPB140_11240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
APG63264.1	APG63265.1	LPB140_11245	LPB140_11255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.511
APG63264.1	APG63820.1	LPB140_11245	LPB140_11250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	SLC13 family permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APG63265.1	APG63264.1	LPB140_11255	LPB140_11245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.511