(24 nodes) Mixed, incl. ABC-2 family transporter protein, and Binding-protein-dependent transport system inner membrane component network (Synechococcus sp. SynAce01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APD49136.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (370 aa)
	APD47371.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	APD47372.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
	APD47373.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APD49233.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APD47374.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (167 aa)
	APD47450.1	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ctaB	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (332 aa)
	APD49252.1	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	APD47451.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	APD47452.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	APD47495.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	APD47589.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (339 aa)
	APD49295.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	APD47590.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APD49296.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	APD48052.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	APD48447.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (418 aa)
	APD49540.1	Glycoside hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APD48612.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (919 aa)
	APD48613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	APD49587.1	Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	APD49048.1	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	APD49049.1	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)

Your Current Organism:

Synechococcus sp. SynAce01

NCBI taxonomy Id: 1916956
Other names: S. sp. SynAce01

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APD47371.1	APD47372.1	BM449_02510	BM449_02515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
APD47371.1	APD47373.1	BM449_02510	BM449_02520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
APD47371.1	APD47374.1	BM449_02510	BM449_02530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
APD47371.1	APD48612.1	BM449_02510	BM449_10695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
APD47371.1	APD48613.1	BM449_02510	BM449_10700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
APD47371.1	APD49233.1	BM449_02510	BM449_02525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
APD47372.1	APD47371.1	BM449_02515	BM449_02510	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
APD47372.1	APD47373.1	BM449_02515	BM449_02520	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APD47372.1	APD47374.1	BM449_02515	BM449_02530	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.670
APD47372.1	APD47450.1	BM449_02515	BM449_03025	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APD47372.1	APD47451.1	BM449_02515	BM449_03040	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
APD47372.1	APD47495.1	BM449_02515	BM449_03360	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
APD47372.1	APD47590.1	BM449_02515	BM449_04010	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
APD47372.1	APD48052.1	BM449_02515	BM449_07050	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
APD47372.1	APD48612.1	BM449_02515	BM449_10695	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
APD47372.1	APD48613.1	BM449_02515	BM449_10700	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
APD47372.1	APD49048.1	BM449_02515	BM449_13365	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
APD47372.1	APD49049.1	BM449_02515	BM449_13370	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
APD47372.1	APD49233.1	BM449_02515	BM449_02525	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APD47372.1	APD49295.1	BM449_02515	BM449_04005	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505