(11 nodes) ABC transporter type 1, transmembrane domain, and Other glycan degradation network (Synechococcus sp. SynAce01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APD46997.1	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	APD47325.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
	APD47368.1	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	APD47426.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	APD49432.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
	APD48431.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (661 aa)
	APD48595.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	APD48645.1	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	APD49559.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)
	APD48808.1	Bile acid beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (840 aa)
	APD49134.1	CbbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)

Your Current Organism:

Synechococcus sp. SynAce01

NCBI taxonomy Id: 1916956
Other names: S. sp. SynAce01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APD46997.1	APD47426.1	BM449_00030	BM449_02860	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APD46997.1	APD48595.1	BM449_00030	BM449_10595	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
APD46997.1	APD48645.1	BM449_00030	BM449_10885	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
APD46997.1	APD48808.1	BM449_00030	BM449_11850	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bile acid beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APD46997.1	APD49134.1	BM449_00030	BM449_13915	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
APD46997.1	APD49432.1	BM449_00030	BM449_07670	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
APD47325.1	APD47426.1	BM449_02160	BM449_02860	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APD47325.1	APD48645.1	BM449_02160	BM449_10885	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APD47325.1	APD48808.1	BM449_02160	BM449_11850	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bile acid beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APD47325.1	APD49134.1	BM449_02160	BM449_13915	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
APD47325.1	APD49432.1	BM449_02160	BM449_07670	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
APD47368.1	APD47426.1	BM449_02490	BM449_02860	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APD47368.1	APD48645.1	BM449_02490	BM449_10885	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APD47368.1	APD48808.1	BM449_02490	BM449_11850	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bile acid beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APD47368.1	APD49134.1	BM449_02490	BM449_13915	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
APD47368.1	APD49432.1	BM449_02490	BM449_07670	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APD47426.1	APD46997.1	BM449_02860	BM449_00030	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APD47426.1	APD47325.1	BM449_02860	BM449_02160	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APD47426.1	APD47368.1	BM449_02860	BM449_02490	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APD47426.1	APD48431.1	BM449_02860	BM449_09520	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884