STRINGSTRING
dps dps AIB11570.1 AIB11570.1 cobQ cobQ cobO cobO cobU cobU katN katN bfr2 bfr2 coxE coxE AIB11266.1 AIB11266.1 AIB11204.1 AIB11204.1 AIB11195.1 AIB11195.1 gluQ gluQ hemN hemN hemA hemA AIB10732.1 AIB10732.1 cobT cobT cobV cobV AIB10722.1 AIB10722.1 AIB10721.1 AIB10721.1 cobS cobS cobD-2 cobD-2 cobC cobC map2 map2 AIB11633.1 AIB11633.1 hemB hemB AIB11654.1 AIB11654.1 pqqD pqqD pqqE pqqE gltX2 gltX2 tig tig AIB12070.1 AIB12070.1 nifB nifB bfr1 bfr1 map1 map1 gltX1 gltX1 hemC hemC hemD hemD ctaA ctaA AIB13009.1 AIB13009.1 hemE hemE AIB13098.1 AIB13098.1 AIB13158.1 AIB13158.1 AIB10670.1 AIB10670.1 cobD cobD AIB10436.1 AIB10436.1 AIB11571.1 AIB11571.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dpsFerritin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family. (155 aa)
AIB11570.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
cobQCobalamin biosynthesis protein CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (485 aa)
cobOCobinamide adenolsyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. (203 aa)
cobUAdenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. (174 aa)
katNMn-containing catalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
bfr2Bacterioferritin; Iron-storage protein. (161 aa)
coxEProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (309 aa)
AIB11266.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
AIB11204.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
AIB11195.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
gluQglutamyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family. (283 aa)
hemNCoproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (468 aa)
hemACatalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
AIB10732.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
cobTNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). (342 aa)
cobVCobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. (259 aa)
AIB10722.1Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
AIB10721.1Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
cobSCobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
cobD-2Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (320 aa)
cobCL-threonine-O-3-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
map2Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (275 aa)
AIB11633.1rRNA (guanine-N2)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
hemBDelta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family. (337 aa)
AIB11654.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
pqqDPyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
pqqEPyrroloquinoline quinone biosynthesis protein PqqE; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). (369 aa)
gltX2glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (470 aa)
tigTrigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. (444 aa)
AIB12070.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
nifBNitrogen fixation protein NifB; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
bfr1Bacterioferritin; Iron-storage protein. (158 aa)
map1Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (277 aa)
gltX1glutamyl-tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (447 aa)
hemCPorphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (308 aa)
hemDUroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (251 aa)
ctaAHeme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. (361 aa)
AIB13009.1Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (385 aa)
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (348 aa)
AIB13098.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
AIB13158.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
AIB10670.1Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
cobDCobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (335 aa)
AIB10436.1Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
AIB11571.1Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
Your Current Organism:
Azospirillum brasilense
NCBI taxonomy Id: 192
Other names: A. brasilense, ATCC 29145, Azospirillum brasiliense, LMG 13127, LMG:13127, NBRC 102289, NRRL B-14647, Roseomonas fauriae, Spirillum lipoferum, bacterium ASAZOES-148, strain sp. 7
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