5 items (Geobacillus genomosp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpmF	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family. (57 aa)
	rpmB	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family. (61 aa)
	rpmG	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)
	rpsT	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (89 aa)
	rpmE	50S ribosomal protein L31; Binds the 23S rRNA. (66 aa)

Your Current Organism:

Geobacillus genomosp.

NCBI taxonomy Id: 1921421
Other names: Bacillus sp. JF8, G. genomosp. 3, Geobacillus genomosp. 3, Geobacillus genomospecies 3, Geobacillus sp. JF8

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpmE	M493_05995	M493_17685	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.983
rpmB	rpmF	M493_05995	M493_05615	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	0.994
rpmB	rpmG	M493_05995	M493_12725	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	0.993
rpmB	rpsT	M493_05995	M493_13030	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.993
rpmE	rpmB	M493_17685	M493_05995	50S ribosomal protein L31; Binds the 23S rRNA.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	0.983
rpmE	rpmF	M493_17685	M493_05615	50S ribosomal protein L31; Binds the 23S rRNA.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	0.983
rpmE	rpmG	M493_17685	M493_12725	50S ribosomal protein L31; Binds the 23S rRNA.	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	0.980
rpmE	rpsT	M493_17685	M493_13030	50S ribosomal protein L31; Binds the 23S rRNA.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.985
rpmF	rpmB	M493_05615	M493_05995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rpmF	rpmE	M493_05615	M493_17685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.983
rpmF	rpmG	M493_05615	M493_12725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	0.984
rpmF	rpsT	M493_05615	M493_13030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.992
rpmG	rpmB	M493_12725	M493_05995	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rpmG	rpmE	M493_12725	M493_17685	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.980
rpmG	rpmF	M493_12725	M493_05615	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	0.984
rpmG	rpsT	M493_12725	M493_13030	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.978
rpsT	rpmB	M493_13030	M493_05995	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rpsT	rpmE	M493_13030	M493_17685	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L31; Binds the 23S rRNA.	0.985
rpsT	rpmF	M493_13030	M493_05615	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL32 family.	0.992
rpsT	rpmG	M493_13030	M493_12725	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL33 family.	0.978