(4 nodes) Penicillin binding protein transglycosylase domain network (Geobacillus genomosp.)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGT33135.1	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (916 aa)
	AGT31941.1	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (685 aa)
	AGT32480.2	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (905 aa)
	AGT33769.1	Penicillin-binding protein 2D; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (681 aa)

Your Current Organism:

Geobacillus genomosp.

NCBI taxonomy Id: 1921421
Other names: Bacillus sp. JF8, G. genomosp. 3, Geobacillus genomosp. 3, Geobacillus genomospecies 3, Geobacillus sp. JF8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGT31941.1	AGT32480.2	M493_08310	M493_11150	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.917
AGT31941.1	AGT33135.1	M493_08310	M493_14485	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGT31941.1	AGT33769.1	M493_08310	M493_17815	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein 2D; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGT32480.2	AGT31941.1	M493_11150	M493_08310	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.917
AGT32480.2	AGT33135.1	M493_11150	M493_14485	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.926
AGT32480.2	AGT33769.1	M493_11150	M493_17815	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein 2D; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.921
AGT33135.1	AGT31941.1	M493_14485	M493_08310	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGT33135.1	AGT32480.2	M493_14485	M493_11150	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.926
AGT33769.1	AGT31941.1	M493_17815	M493_08310	Penicillin-binding protein 2D; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGT33769.1	AGT32480.2	M493_17815	M493_11150	Penicillin-binding protein 2D; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.921