STRINGSTRING
API58815.1 API58815.1 API59975.1 API59975.1 API59976.1 API59976.1 API60646.1 API60646.1 API60647.1 API60647.1 API60648.1 API60648.1 API60649.1 API60649.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
API58815.1SLC13 family permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
API59975.1Carboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
API59976.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (306 aa)
API60646.1C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
API60647.1Polyphenol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (255 aa)
API60648.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
API60649.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
Your Current Organism:
Tardibacter chloracetimidivorans
NCBI taxonomy Id: 1921510
Other names: JJ-A5, KACC 19450, NBRC 113160, Sphingomonas sp. JJ-A5, T. chloracetimidivorans
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