STRINGSTRING
surE surE dut dut API60652.1 API60652.1 API60778.1 API60778.1 API60824.1 API60824.1 API60827.1 API60827.1 API60831.1 API60831.1 API60843.1 API60843.1 BSL82_10970 BSL82_10970 API57938.1 API57938.1 API60863.1 API60863.1 API58013.1 API58013.1 rnhA rnhA rnhB rnhB API58086.1 API58086.1 API58129.1 API58129.1 API60899.1 API60899.1 API58254.1 API58254.1 API58260.1 API58260.1 API58262.1 API58262.1 API58331.1 API58331.1 API58419.1 API58419.1 API58628.1 API58628.1 API58636.1 API58636.1 API58641.1 API58641.1 API58644.1 API58644.1 API58701.1 API58701.1 API58706.1 API58706.1 API58711.1 API58711.1 BSL82_04790 BSL82_04790 API58727.1 API58727.1 API58729.1 API58729.1 API58910.1 API58910.1 API60976.1 API60976.1 pnp pnp API59067.1 API59067.1 API59163.1 API59163.1 API59167.1 API59167.1 API59200.1 API59200.1 API59206.1 API59206.1 API59285.1 API59285.1 API59368.1 API59368.1 API59388.1 API59388.1 API59406.1 API59406.1 rph rph API59424.1 API59424.1 API61069.1 API61069.1 API61074.1 API61074.1 API59665.1 API59665.1 API59666.1 API59666.1 API59683.1 API59683.1 API59684.1 API59684.1 API59685.1 API59685.1 API59687.1 API59687.1 API59688.1 API59688.1 API59718.1 API59718.1 API59741.1 API59741.1 API59758.1 API59758.1 API59766.1 API59766.1 API59767.1 API59767.1 API59772.1 API59772.1 API59775.1 API59775.1 API59777.1 API59777.1 API59801.1 API59801.1 API59822.1 API59822.1 API59823.1 API59823.1 API59828.1 API59828.1 API59829.1 API59829.1 API59830.1 API59830.1 API59888.1 API59888.1 API61111.1 API61111.1 xseA xseA API60084.1 API60084.1 API60102.1 API60102.1 API60117.1 API60117.1 API60122.1 API60122.1 API60251.1 API60251.1 API61166.1 API61166.1 API60257.1 API60257.1 API61168.1 API61168.1 API60262.1 API60262.1 BSL82_14020 BSL82_14020
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
surE5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (254 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (153 aa)
API60652.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)
API60778.15-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
API60824.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
API60827.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
API60831.15-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
API60843.1Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
BSL82_10970Rieske (2Fe-2S) protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
API57938.1NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
API60863.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
API58013.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (149 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (199 aa)
API58086.1Terminase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
API58129.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (573 aa)
API60899.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
API58254.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
API58260.15-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
API58262.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
API58331.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
API58419.1PIG-L domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
API58628.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
API58636.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
API58641.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
API58644.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
API58701.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
API58706.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
API58711.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
BSL82_04790Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
API58727.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
API58729.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (107 aa)
API58910.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (462 aa)
API60976.1Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (780 aa)
API59067.1Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
API59163.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
API59167.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
API59200.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
API59206.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
API59285.1Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
API59368.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
API59388.112-oxophytodienoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
API59406.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
API59424.1Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (200 aa)
API61069.1Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
API61074.12-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
API59665.1Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (314 aa)
API59666.14-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (342 aa)
API59683.1Catechol 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
API59684.14-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (348 aa)
API59685.1Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (305 aa)
API59687.14-oxalocrotonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
API59688.12-oxopent-4-enoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
API59718.1Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
API59741.1Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
API59758.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
API59766.1Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
API59767.1Anthranilate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
API59772.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
API59775.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
API59777.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (265 aa)
API59801.1Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
API59822.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
API59823.1(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
API59828.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
API59829.1Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (313 aa)
API59830.14-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (344 aa)
API59888.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
API61111.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (463 aa)
API60084.1Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
API60102.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
API60117.1Molecular chaperone Tir; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
API60122.1Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
API60251.12,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (264 aa)
API61166.12-oxo-hepta-3-ene-1,7-dioic acid hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
API60257.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
API61168.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
API60262.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
BSL82_14020Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
Your Current Organism:
Tardibacter chloracetimidivorans
NCBI taxonomy Id: 1921510
Other names: JJ-A5, KACC 19450, NBRC 113160, Sphingomonas sp. JJ-A5, T. chloracetimidivorans
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