Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Cj0239c | Cj0241c | Cj0239c | Cj0241c | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | 0.696 |
| Cj0239c | Cj0243c | Cj0239c | Cj0243c | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | 0.515 |
| Cj0239c | Cj0883c | Cj0239c | Cj0883c | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Putative transcriptional regulator; Original (2000) note: Cj0883c, unknown, len: 136 aa; identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa), and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa), fasta scores; opt: 174 z-score: 226.5 E(): 2.6e-05, 28.3% identity in 138 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept i [...] | 0.859 |
| Cj0239c | Cj0954c | Cj0239c | Cj0954c | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Putative DnaJ-like protein; Original (2000) note: Cj0954c, possible dnaJ-like protein, len: 256 aa; weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa), fasta scores; opt: 167 z-score: 193.0 E(): 0.0019, 26.9% identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ, DnaJ domain; Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones, chaperonins, heat shock. | 0.999 |
| Cj0239c | iscS | Cj0239c | Cj0240c | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | 0.999 |
| Cj0241c | Cj0239c | Cj0241c | Cj0239c | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.696 |
| Cj0241c | Cj0243c | Cj0241c | Cj0243c | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | 0.612 |
| Cj0241c | iscS | Cj0241c | Cj0240c | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | 0.694 |
| Cj0243c | Cj0239c | Cj0243c | Cj0239c | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.515 |
| Cj0243c | Cj0241c | Cj0243c | Cj0241c | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | 0.612 |
| Cj0243c | iscS | Cj0243c | Cj0240c | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | 0.439 |
| Cj0883c | Cj0239c | Cj0883c | Cj0239c | Putative transcriptional regulator; Original (2000) note: Cj0883c, unknown, len: 136 aa; identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa), and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa), fasta scores; opt: 174 z-score: 226.5 E(): 2.6e-05, 28.3% identity in 138 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept i [...] | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.859 |
| Cj0883c | Cj0954c | Cj0883c | Cj0954c | Putative transcriptional regulator; Original (2000) note: Cj0883c, unknown, len: 136 aa; identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa), and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa), fasta scores; opt: 174 z-score: 226.5 E(): 2.6e-05, 28.3% identity in 138 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept i [...] | Putative DnaJ-like protein; Original (2000) note: Cj0954c, possible dnaJ-like protein, len: 256 aa; weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa), fasta scores; opt: 167 z-score: 193.0 E(): 0.0019, 26.9% identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ, DnaJ domain; Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones, chaperonins, heat shock. | 0.595 |
| Cj0883c | iscS | Cj0883c | Cj0240c | Putative transcriptional regulator; Original (2000) note: Cj0883c, unknown, len: 136 aa; identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa), and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa), fasta scores; opt: 174 z-score: 226.5 E(): 2.6e-05, 28.3% identity in 138 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept i [...] | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | 0.968 |
| Cj0954c | Cj0239c | Cj0954c | Cj0239c | Putative DnaJ-like protein; Original (2000) note: Cj0954c, possible dnaJ-like protein, len: 256 aa; weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa), fasta scores; opt: 167 z-score: 193.0 E(): 0.0019, 26.9% identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ, DnaJ domain; Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones, chaperonins, heat shock. | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.999 |
| Cj0954c | Cj0883c | Cj0954c | Cj0883c | Putative DnaJ-like protein; Original (2000) note: Cj0954c, possible dnaJ-like protein, len: 256 aa; weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa), fasta scores; opt: 167 z-score: 193.0 E(): 0.0019, 26.9% identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ, DnaJ domain; Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones, chaperonins, heat shock. | Putative transcriptional regulator; Original (2000) note: Cj0883c, unknown, len: 136 aa; identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa), and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa), fasta scores; opt: 174 z-score: 226.5 E(): 2.6e-05, 28.3% identity in 138 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept i [...] | 0.595 |
| Cj0954c | iscS | Cj0954c | Cj0240c | Putative DnaJ-like protein; Original (2000) note: Cj0954c, possible dnaJ-like protein, len: 256 aa; weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa), fasta scores; opt: 167 z-score: 193.0 E(): 0.0019, 26.9% identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ, DnaJ domain; Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones, chaperonins, heat shock. | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | 0.771 |
| iscS | Cj0239c | Cj0240c | Cj0239c | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.999 |
| iscS | Cj0241c | Cj0240c | Cj0241c | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family. | 0.694 |
| iscS | Cj0243c | Cj0240c | Cj0243c | Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] | Hypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. | 0.439 |
page 1 of 2