STRINGSTRING
Cj0172c Cj0172c Cj0947c Cj0947c Cj0948c Cj0948c Cj0949c Cj0949c Cj1515c Cj1515c
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cj0172cPutative saccharopine dehydrogenase; Original (2000) note: Cj0172c, unknown, len: 401 aa; similar to hypothetical proteins e.g. TR:Q55131 (EMBL:D64001) Synechocystis sp. SLR0049 (398 aa), fasta scores; opt: 1534 z-score: 2324.2 E(): 0, 55.7% identity in 397 aa overlap. 63.8% identity to HP1507 conserved hypothetical ATP-binding protein; Updated (2006) note: Pfam domain PF03435 Saccharopine dehydrogenase was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has yet been carried out. Putative kept within product functi [...] (401 aa)
Cj0947cPutative carbon-nitrogen hydrolase; Original (2000) note: Cj0947c, probable hydrolase,len: 290 aa; similar to prokaryotic hypothetical hydrolases, and to e.g. BUP_RAT beta-ureidopropionase (393 aa), fasta scores; opt: 319 z-score: 392.0 E(): 1.6e-14,26.0% identity in 304 aa overlap. 60.9% identity to HP0757; Updated (2006) note: Pfam domain PF00795 Carbon-nitrogen hydrolase identified within CDS. Product modified to more specific family member based on motif match. Specific characterisation has been carried out yet,so putative kept in product funciton. Functional classification - Misc. (290 aa)
Cj0948cPutative cation efflux family protein; Original (2000) note: Cj0948c, possible transmembrane transport protein, len: 295 aa; similar to members of the UPF0018 family, e.g. YIIP_ECOLI (300 aa),fasta scores; opt: 564 z-score: 671.3 E(): 4.3e-30, 31.8% identity in 292 aa overlap, and to cation efflux proteins e.g. CZCD_ALCEU cation efflux system protein CZCD (316 aa), fasta scores; opt: 262 z-score: 316.4 E(): 2.5e-10,22.3% identity in 273 aa overlap. No Hp match. Also similar to Cj1163c (24.7% identity in 279 aa overlap); Updated (2006) note: Pfam domain PF01545 Cation efflux family iden [...] (295 aa)
Cj0949cPutative peptidyl-arginine deiminase family protein; Original (2000) note: Cj0949c, unknown, len: 325 aa; similar to hypothetical proteins e.g. TR:O86509 (EMBL:AL031124) Streptomyces coelicolor SC1C2.08 (339 aa),fasta scores; opt: 283 z-score: 328.5 E(): 5.3e-11, 24.3% identity in 333 aa overlap. 45.5% identity to HP0049; Updated (2006) note: Pfam domain PF04371 Porphyromonas-type peptidyl-arginine deiminase identified within CDS. Product modified to more specific family member based on motif match. Not fully characterised yet,so putative kept within product function. Functional classi [...] (325 aa)
Cj1515cPutative decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (382 aa)
Your Current Organism:
Campylobacter jejuni NCTC 11168
NCBI taxonomy Id: 192222
Other names: C. jejuni subsp. jejuni NCTC 11168 = ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819 = NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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