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thiC thiC miaB miaB leuC leuC rlmN rlmN bioB bioB Cj1639 Cj1639 sdaA sdaA mutY mutY Cj1618c Cj1618c mrp mrp Cj1585c Cj1585c nuoB nuoB nuoG nuoG nuoI nuoI fdhA fdhA fdhB fdhB Cj1476c Cj1476c Cj1459 Cj1459 rimO rimO Cj1433c Cj1433c hydA2 hydA2 Cj1377c Cj1377c mqnE mqnE hydA hydA Cj1244 Cj1244 petA petA thiH thiH Cj1006c Cj1006c Cj0992c Cj0992c Cj0991c Cj0991c ispH ispH acnB acnB napH napH napG napG napA napA ispG ispG nth nth hemN-2 hemN-2 oorD oorD mqnC mqnC gltB gltB gltD gltD ilvD ilvD Cj0074c Cj0074c queE queE moaA moaA Cj0239c Cj0239c iscS iscS Cj0264c Cj0264c queH queH fdxA fdxA fdxB fdxB hemN hemN Cj0369c Cj0369c frdB frdB sdhB sdhB
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query proteins and first shell of interactors
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proteins of unknown 3D structure
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thiCThiamin biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (430 aa)
miaBPutative tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (433 aa)
leuC3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (470 aa)
rlmNPutative radical SAM domain protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (356 aa)
bioBPutative biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (278 aa)
Cj1639NifU protein homolog; Original (2000) note: Cj1639, unknown, len: 90 aa; similar to members of the NIFU family of hypothetical poteins e.g. NIU1_RHOCA NIFU protein 1 (135 aa), fasta scores; opt: 158 z-score: 219.3 E(): 6.8e-05 36.5% identity in 63 aa overlap. Identical to TR:O69292 (EMBL:Y16882) C. jejuni NIFU-like protein. 52.2% identity to HP1492. Contains Pfam match to entry PF01106 NifU-like,NifU-like domain. Also similar to N-terminus of Cj0239c (38.2% identity in 76 aa overlap). Functional classification - Conserved hypothetical proteins. (90 aa)
sdaAL-serine dehydratase; Original (2000) note: Cj1624c, sdaA, probable L-serine dehydratase, len: 454 aa; similar to many e.g. SDHL_ECOLI L-serine dehydratase 1 (EC 4.2.1.13) (454 aa),fasta scores; opt: 1316 z-score: 1553.3 E(): 0, 46.0% identity in 465 aa overlap. 53.4% identity to HP0132; Updated (2006) note: Pfam domains PF03313 Serine dehydratase alpha chain and PF03315 Serine dehydratase beta chain were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functio [...] (454 aa)
mutYA/G-specific adenine glycosylase; Original (2000) note: Cj1620c, mutY, probable A/G-specific adenine glycosylase, len: 339 aa; similar to e.g. MUTY_ECOLI A/G-specific adenine glycosylase (EC 3.2.2.-) (350 aa), blastp scores; E= 1.0e-41, 39% identity in 271 aa overlap. 47.6% identity to HP0142. Contains Pfam match to entry PF00730 Endonuclease_3, Endonuclease III; Updated (2006) note: Pfam domain PF00730 HhH-GPD superfamily base excision DNA repair and PF00633 Helix-hairpin-helix motif were both identified within CDS. Further support given to product function. Characterisation work has [...] (339 aa)
Cj1618cPutative radical SAM domain protein; Original (2000) note: Cj1618c, unknown, len: 305 aa; weak similarity to hypothetical proteins e.g. TR:Q59026 (EMBL:U67603) Methanococcus jannaschii hypothetical protein MJ1632 (255 aa), fasta scores; opt: 138 z-score: 169.9 E(): 0.038, 25.8% identity in 256 aa overlap (contains predicted iron-sulfur cluster which is conserved in Cj1618c). 34.5% identity to HP0568; Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation h [...] (305 aa)
mrpPutative ATP/GTP-binding protein (Mrp protein homolog); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (368 aa)
Cj1585cPutative oxidoreductase; Original (2000) note: Cj1585c, probable oxidoreductase, len: 923 aa; similar to e.g. YDIJ_ECOLI (1018 aa), fasta scores; opt: 299 z-score: 326.0 E(): 7.7e-11, 24.0% identity in 668 aa overlap, and GLCD_ECOLI glycolate oxidase subunit GLCD (499 aa), fasta scores; opt: 258 z-score: 285.3 E(): 1.4e-08, 23.4% identity in 483 aa overlap. 49.2% identity to HP1222 (misannotated as D-lactate dehydrogenase). Contains PS00551 Prokaryotic molybdopterin oxidoreductases signature 1, ands 2x PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature; Updated (2006) not [...] (923 aa)
nuoBNADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (167 aa)
nuoGOriginal (2000) note: Cj1573c, nuoG, probable NADH dehydrogenase I chain G, len: 820 aa; similar to many e.g. NUAM_RECAM NADH-ubiquinone oxidoreductase 75 kD subunit (691 aa), fasta scores; opt: 320 z-score: 333.6 E(): 2.9e-11, 25.3% identity in 450 aa overlap, and NUOG_ECOLI NADH dehydrogenase I chain G (907 aa), blastp scores; E= 1.8e-10, 26% identity in 161 aa overlap, 30% identity in 43 aa overlap and 36% identity in 22 overlap. 36.3% identity to HP1266. Contains PS00198 4Fe-4S ferredoxins,iron-sulfur binding region signature, and 2x Pfam match to entry PF00037 fer4, 4Fe-4S ferredo [...] (820 aa)
nuoINADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (213 aa)
fdhAOriginal (2000) note: Cj1511c, fdhA, probable formate dehydrogenase large subunit, len: 934 aa; similar to e.g. TR:P28179 (EMBL:X54057) Wolinella succinogenes formate dehydrogenase large subunit precursor (EC 1.2.1.2)(939 aa), fasta scores; opt: 3368 z-score: 3913.9 E(): 7.3e-211, 52.8% identity in 930 aa overlap, and FDHF_ECOLI formate dehydrogenase H (EC 1.2.1.2) (formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (715 aa), fasta scores; opt: 813 z-score: 943.1 E(): 2.2e-45, 30.9% identity in 696 aa overlap. No Hp match. Contains Pfam match to entry PF00384 molybdo [...] (934 aa)
fdhBOriginal (2000) note: Cj1510c, fdhB, probable formate dehydrogenase iron-sulfur subunit, len: 213 aa; similar to e.g. FDHB_WOLSU formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2) (200 aa), fasta scores; opt: 1025 z-score: 1153.1 E(): 0, 69.5% identity in 197 aa overlap. No Hp ortholog. Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature, and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains; Updated (2006) note: Some characterisation in Wolinella succinogenes with acceptable identity score. Putative kept with [...] (213 aa)
Cj1476cOriginal (2000) note: Cj1476c, probable pyruvate-flavodoxin oxidoreductase, len: 1186 aa; highly similar to many e.g. NIFJ_ECOLI probable pyruvate-flavodoxin oxidoreductase (1174 aa), fasta scores; opt: 3586 z-score: 3799.5 E(): 0, 47.2% identity in 1193 aa overlap. N-term has 28.6% identity to HP1110,C-term has 29.7% identity to HP1111. Contains 2x PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature,and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains; Updated (2006) note: Pfam domains PF02775 Thiamine pyrophosphate enzy [...] (1186 aa)
Cj1459Hypothetical protein Cj1459; Original (2000) note: Cj1459, unknown, len: 357 aa; 24.8% identity to HP0468. Functional classification -Conserved hypothetical proteins. (357 aa)
rimOPutative radical SAM domain family protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (439 aa)
Cj1433cHypothetical protein Cj1433c; Original (2000) note: Cj1433c, unknown, len: 368 aa; no Hp match. Contains 9 repeats of the aa sequence KIDLNNT near the N-terminus; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Unknown; PMID:15612919, PMID:10672176. (368 aa)
hydA2Original (2000) note: Cj1399c, hydA2, probable Ni/Fe-hydrogenase small subunit, len: 497 aa; similar to e.g. MBHS_WOLSU quinone-reactive Ni/Fe-hydrogenase small chain (354 aa), fasta scores; opt: 1122 z-score: 1317.8 E(): 0, 52.6% identity in 285 aa overlap. No Hp ortholog. Also similar to Cj1267c (51.5% identity in 330 aa overlap). Contains C-terminal extension not present in other hydrogenase small subunits; Updated (2006) note: Pfam domain PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit identified within CDS. Further support given to product function. Characterised within Woli [...] (497 aa)
Cj1377cPutative ferredoxin; Original (2000) note: Cj1377c, probable ferredoxin,len: 553 aa; limited similarity to e.g. HYCF_ECOLI formate hydrogenlyase subunit 6 (180 aa), fasta scores; opt: 212 z-score: 241.0 E(): 4e-06, 30.6% identity in 134 aa overlap. No Hp match. Contains PS00198 4Fe-4S ferredoxins,iron-sulfur binding region signature, and 2x Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains; Updated (2006) note: No specific characterisation with acceptable identity score carried out yet, so putative kept within product function. Functio [...] (553 aa)
mqnEPutative radical SAM domain protein; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. (354 aa)
hydANi/Fe-hydrogenase small chain; Original (2000) note: Cj1267c, hydA, probable Ni/Fe-hydrogenase small subunit, len: 379 aa; similar to e.g. MBHS_WOLSU quinone-reactive Ni/Fe-hydrogenase small chain precursor (354 aa), fasta scores; opt: 1968 z-score: 2288.8 E(): 0, 78.1% identity in 351 aa overlap, and MBHS_ECOLI hydrogenase-1 small chain precursor (372 aa),fasta scores; opt: 1058 z-score: 1232.4 E(): 0, 44.0% identity in 361 aa overlap. 68.2% identity to HP0631. Also similar to Cj1399c (50.8% identity in 329 aa overlap); Updated (2006) note: Pfam domain PF01058 NADH ubiquinone oxidored [...] (379 aa)
Cj1244Putative radical SAM domain protein; Original (2000) note: Cj1244, unknown, len: 300 aa; similar to hypothetical proteins e.g. YD12_METJA Methanococcus jannaschii MJ1312 (321 aa), fasta scores; opt: 436 z-score: 499.9 E(): 1.5e-20, 30.7% identity in 313 aa overlap. 40.1% identity to HP0117; Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet, so putative kept within product function. Functional classification -Misc. (300 aa)
petAPutative ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (167 aa)
thiHOriginal (2000) note: Cj1044c, thiH, probable thiamine biosynthesis protein, len: 381 aa; similar to THIH_ECOLI THIH protein (377 aa), fasta scores; opt: 785 z-score: 909.4 E(): 0, 37.4% identity in 350 aa overlap. No Hp match; Updated (2006) note: Pfam domains PF06968 Biotin and Thiamin Synthesis associated domain and PF04055 Radical SAM superfamily were identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score, so putative not added to product function. Based on recent characterisation papers within Escherichia [...] (381 aa)
Cj1006cPutative MiaB-like tRNA modifying enzyme; Original (2000) note: Cj1006c, unknown, len: 416 aa; similar to hypothetical proteins belonging to the UPF0004 family e.g. Y16R_MYCIO (438 aa), fasta scores; opt: 580 z-score: 664.7 E(): 1e-29, 30.5% identity in 413 aa overlap. 50.1% identity to HP0285. Also similar to Cj0458c (28.6% identity in 391 aa overlap) and Cj1454c (28.4% identity in 419 aa overlap). Contains PS01278 Uncharacterized protein family UPF0004 signature and Pfam match to entry PF00919 UPF0004; Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within [...] (416 aa)
Cj0992cOriginal (2000) note: Cj0992c, hemN, probable oxygen-independent coproporphyrinogen III oxidase, len: 451 aa; HEMN_ECOLI oxygen-independent coproporphyrinogen III oxidase (457 aa), fasta scores; opt: 1283 z-score: 1443.0 E(): 0, 44.9% identity in 452 aa overlap. 56.6% identity to HP0665; Updated (2006) note: Characterised in Escherichia coli with acceptable identity score, so putative not added to product function. Functional classification -Biosynthesis of cofactors, prosthetic groups and carriers - Heme; PMID:7768836; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (451 aa)
Cj0991cOriginal (2000) note: Cj0991c, probable oxidoreductase ferredoxin-type electron transport protein,len: 421; weak similarity to e.g. GLPC_ECOLI anaerobic glycerol-3-phosphate dehydrogenase subunit C (396 aa),fasta scores; opt: 280 z-score: 323.3 E(): 1e-10, 23.3% identity in 425 aa overlap, and GLCF_ECOLI glycolate oxidase iron-sulfur subunit (407 aa), fasta scores; opt: 199 z-score: 231.5 E(): 1.4e-05, 22.3% identity in 413 aa overlap. 44.7% identity to HP0666 (annotated as glpC, but there are no homologs of glpA or glpB in Hp or Cj). Contains PS00198 4Fe-4S ferredoxins, iron-sulfur bi [...] (421 aa)
ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (277 aa)
acnBAconitate hydratase; Original (2000) note: Cj0835c, acnB, probable aconitate hydratase, len: 848 aa; highly similar to e.g. ACO2_ECOLI aconitate hydratase 2 (EC 4.2.1.3) (865 aa),fasta scores; opt: 2785 z-score: 3084.1 E(): 0, 60.5% identity in 858 aa overlap. 65.8% identity to HP0779. Contains PS00450 and PS01244 Aconitase family signatures 1 and 2, and Pfam match to entry PF00330 aconitase; Updated (2006) note: Pfam domain PF06434 Aconitate hydratase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. [...] (848 aa)
napHPutative ferredoxin; Original (2000) note: Cj0782, napH, probable ferredoxin, len: 260 aa; similar to e.g. NAPH_ECOLI ferredoxin-type protein NAPH (287 aa), fasta scores; opt: 588 z-score: 663.2 E(): 1.2e-29, 35.3% identity in 255 aa overlap, and MAUN_PARDE methylamine utilization ferredoxin-type protein (283 aa), fasta scores; opt: 596 z-score: 672.2 E(): 3.8e-30, 37.8% identity in 251 aa overlap. No Hp ortholog. Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature, and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding do [...] (260 aa)
napGPutative ferredoxin; Original (2000) note: Cj0781, napG, probable ferredoxin, len: 246 aa; similar to e.g. NAPG_ECOLI ferredoxin-type protein NAPG (231 aa), fasta scores; opt: 763 z-score: 884.9 E(): 0, 48.2% identity in 228 aa overlap, and MAUM_METEX methylamine utilization ferredoxin-type protein (220 aa), fasta scores; opt: 635 z-score: 738.5 E(): 0, 45.7% identity in 210 aa overlap. No Hp match. Contains PS00198 4Fe-4S ferredoxins,iron-sulfur binding region signature, and 3x Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains; Update [...] (246 aa)
napAPeriplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (924 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (357 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (208 aa)
hemN-2Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (355 aa)
oorDOriginal (2000) note: Cj0535, oorD, probable OORD subunit of 2-oxoglutarate:acceptor oxidoreductase, len: 103 aa; similar to TR:O68227 (EMBL:AF021094) H. pylori OORD subunit of 2-oxoglutarate:acceptor oxidoreductase (113 aa), fasta scores; opt: 436 z-score: 768.9 E(): 0,59.8% identity in 97 aa overlap. 59.8% identity to HP0588. Contains 2x PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 17.40, E-value 0.00091; Updated (2006) note: Characterised within Helico [...] (103 aa)
mqnCPutative radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). (348 aa)
gltBOriginal (2000) note: Cj0007, gltB, probable glutamate synthase (NADPH) large subunit, len: 1496 aa; similar to many e.g. GLTB_ECOLI glutamate synthase (NADPH) large chain (1517 aa), fasta scores; opt: 3846 z-score: 3828.3 E(): 0, 42.5% identity in 1488 aa overlap. No Hp match; Updated (2006) note: Pfam domains PF00310 Glutamine amidotransferases class-II, PF04898 Glutamate synthase central domain, PF01645 Conserved region in glutamate synthase and PF01493 GXGXG motif were all identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with [...] (1496 aa)
gltDOriginal (2000) note: Cj0009, gltD, probable glutamate synthase (NADPH) small subunit, len: 481 aa; similar to many e.g. GLTD_ECOLI glutamate synthase (NADPH) small chain (EC 1.4.1.13) (471 aa), fasta scores; opt: 807 z-score: 909.0 E(): 0, 33.0% identity in 482 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF00070 Pyridine nucleotide-disulphide oxidoreductase, PF07992 Pyridine nucleotide-disulphide oxidoreductase, PF03486 HI0933-like protein, PF01266 FAD dependent oxidoreductase, PF00890 FAD binding domain and PF01593 Flavin containing amine oxidoreductase were identified [...] (481 aa)
ilvDDihydroxy-acid dehydratase; Original (2000) note: Cj0013, ilvD, probable dihydroxy-acid dehydratase, len: 558 aa; highly similar to e.g. ILVD_ECOLI dihydroxy-acid dehydratase (EC 4.2.1.9) (605 aa), fasta scores; opt: 1091 z-score: 2191.4 E(): 0,46.9% identity in 597 aa overlap. 32.0% identity to HP1100 (6-phosphogluconate dehydratase). Contains PS00886 and PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signatures 1 and 2, and Pfam match to entry PF00920 ILVD_EDD, Dehydratase family, score 784.10, E-value 5.5e-232; Updated (2006) note: Characterised within Escherichia coli w [...] (558 aa)
Cj0074cPutative iron-sulfur protein; Original (2000) note: Cj0074c, probable iron-sulfur protein, len: 479 aa; similar to hypothetical proteins e.g. YKGF_ECOLI (475 aa), fasta scores; opt: 1142 z-score: 1335.9 E(): 0, 38.3% identity in 462 aa overlap. 58.1% identity to HP0138. Contains 2x PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature and 2x Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., scores 13.80, E-value 0.0095, and 12.30, E-value 0.026; Updated (2006) note: No specific characterisation with acceptable identity sco [...] (479 aa)
queEPutative radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (247 aa)
moaAPutative molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (320 aa)
Cj0239cNifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (323 aa)
iscSOriginal (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...] (393 aa)
Cj0264cOriginal (2000) note: Cj0264c, probable molybdopterin-containing oxidoreductase, len: 838 aa; highly similar to many e.g. DMSA_RHOSH dimethyl sulfoxide reductase precursor (822 aa), fasta scores; opt: 1343 z-score: 2990.1 E(): 0, 46.8% identity in 842 aa overlap,and BISC_ECOLI biotin sulfoxide reductase 1 (739 aa),fasta scores; opt: 1263 z-score: 2612.9 E(): 0, 46.7% identity in 766 aa overlap. 40.9% identity to HP0407. Contains PS00017 ATP/GTP-binding site motif A (P-loop),PS00932 Prokaryotic molybdopterin oxidoreductases signature 3, Pfam match to entry PF00384 molybdopterin,Prokaryo [...] (838 aa)
queHConserved hypothetical protein Cj0272; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (363 aa)
fdxAFerredoxin; Original (2000) note: Cj0333c, fdxA, probable ferredoxin, len: 94 aa; similar to many e.g. FER_CLOTM ferredoxin (55 aa), fasta scores; opt: 142 z-score: 311.2 E(): 4.5e-10, 45.8% identity in 59 aa overlap. No Hp ortholog. Also similar to Cj0354c (38.8% identity in 67 aa overlap). Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 51.80, E-value 8.8e-14; Updated (2006) note: Similar to many e.g. Clostridium sp. with acceptable identity score [...] (94 aa)
fdxBFerredoxin; Original (2000) note: Cj0354c, fdxB, probable ferredoxin, len: 81 aa; similar to many e.g. FER_CHRVI ferredoxin (82 aa), fasta scores; opt: 282 z-score: 445.5 E(): 1.5e-17, 45.3% identity in 75 aa overlap. 58.4% identity to HP0277. Also similar to Cj0333c (fdx); 38.8% identity in 67 aa overlap. Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 39.00,E-value 4.8e-10; Updated (2006) note: Characterised within Chromatium vinosum with acceptab [...] (81 aa)
hemNPutative oxygen-independent coproporphyrinogen III oxidase; Original (2000) note: Cj0363c, probable oxidoreductase, len: 448 aa; some similarity to e.g. HEMN_BACSU probable oxygen-independent coproporphyrinogen III oxidase (366 aa), fasta scores; opt: 354 z-score: 228.9 E(): 1.7e-05, 26.6% identity in 368 aa overlap. No Hp ortholog; Updated (2006) note: Pfam domains PF06969 HemN C-terminal region and PF04055 Radical SAM superfamily were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis and many others with marginal identity score. [...] (448 aa)
Cj0369cOriginal (2000) note: Cj0369c, ferredoxin domain-containing integral membrane protein, len: 458 aa; some similarity to e.g. RDXA_RHOSH RDXA protein (469 aa),fasta scores; opt: 474 z-score: 657.7 E(): 2.2e-29, 24.9% identity in 402 aa overlap, and FIXG_RHIME nitrogen fixation protein FIXG (524 aa), fasta scores; opt: 476 z-score: 533.8 E(): 1.8e-22, 28.7% identity in 296 aa overlap. 45.7% identity to HP1508. Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., [...] (458 aa)
frdBOriginal (2000) note: Cj0410, frdB, probable fumarate reductase iron-sulfur protein, len: 723 aa; similar to FRDB_WOLSU fumarate reductase iron-sulfur protein (EC 1.3.99.1) (239 aa), fasta scores; opt: 1211 z-score: 1762.6 E(): 0, 68.4% identity in 237 aa overlap. 65.8% identity to HP0191. Contains PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 41.20,E-value 1.1e-10; Updated (2006) note: Pfam domain PF00111 2Fe-2S iron-sulfur cluster binding domain was iden [...] (241 aa)
sdhBOriginal (2000) note: Cj0438, sdhB, possibleble succinate dehydrogenase iron-sulfur protein, len: 321 aa; similar to e.g. DHSB_MYCGR succinate dehydrogenase (ubiquinone) iron-sulfur protein (EC 1.3.5.1) (297 aa),fasta scores; opt: 352 z-score: 442.4 E(): 2.4e-17, 29.3% identity in 215 aa overlap. No Hp ortholog, but 28.1% identical to HP0191 fumarate reductase, iron-sulfur subunit (frdB). Contains PS00197 2Fe-2S ferredoxins,iron-sulfur binding region signature, PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature, and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and [...] (321 aa)
Your Current Organism:
Campylobacter jejuni NCTC 11168
NCBI taxonomy Id: 192222
Other names: C. jejuni subsp. jejuni NCTC 11168 = ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819 = NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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