Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| frdB | sdhB | Cj0410 | Cj0438 | Original (2000) note: Cj0410, frdB, probable fumarate reductase iron-sulfur protein, len: 723 aa; similar to FRDB_WOLSU fumarate reductase iron-sulfur protein (EC 1.3.99.1) (239 aa), fasta scores; opt: 1211 z-score: 1762.6 E(): 0, 68.4% identity in 237 aa overlap. 65.8% identity to HP0191. Contains PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 41.20,E-value 1.1e-10; Updated (2006) note: Pfam domain PF00111 2Fe-2S iron-sulfur cluster binding domain was iden [...] | Original (2000) note: Cj0438, sdhB, possibleble succinate dehydrogenase iron-sulfur protein, len: 321 aa; similar to e.g. DHSB_MYCGR succinate dehydrogenase (ubiquinone) iron-sulfur protein (EC 1.3.5.1) (297 aa),fasta scores; opt: 352 z-score: 442.4 E(): 2.4e-17, 29.3% identity in 215 aa overlap. No Hp ortholog, but 28.1% identical to HP0191 fumarate reductase, iron-sulfur subunit (frdB). Contains PS00197 2Fe-2S ferredoxins,iron-sulfur binding region signature, PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature, and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and [...] | 0.690 |
| moaD | thiS | Cj1517 | Cj1047c | Original (2000) note: Cj1517, moaD, possible molybdopterin converting factor, subunit 1, len: 73 aa; similar to many predicted moaD genes, e.g. TR:O31706 (EMBL:AF012285) Bacillus subtilis molybdopterin converting factor (subunit 1) (77 aa), fasta scores; opt: 111 z-score: 167.7 E(): 0.051, 30.5% identity in 59 aa overlap, and weakly similar to MOAD_ECOLI molybdopterin [mpt] converting factor, subunit 1 (81 aa), fasta scores; opt: 81 z-score: 127.5 E(): 8.8, 38.5% identity in 26 aa overlap. 61.6% identity to HP0801; Updated (2006) note: Pfam domain PF02597 ThiS family identified within [...] | Putative thiamine biosynthesis protein; Original (2000) note: Cj1047c, unknown, len: 63 aa; similar to hypothetical proteins e.g. YC40_ODOSI (73 aa),fasta scores; opt: 131 z-score: 200.4 E(): 0.00072, 37.1% identity in 62 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02597 ThiS family identified within CDS. Product modified to a more specific family member based on motif match. Characterisation has been carried out within Escherichia coli and Bacillus subtilis with marginal simlilarity score. Putativae kept in product function. Functional classification - Biosynthesis of [...] | 0.582 |
| sdhB | frdB | Cj0438 | Cj0410 | Original (2000) note: Cj0438, sdhB, possibleble succinate dehydrogenase iron-sulfur protein, len: 321 aa; similar to e.g. DHSB_MYCGR succinate dehydrogenase (ubiquinone) iron-sulfur protein (EC 1.3.5.1) (297 aa),fasta scores; opt: 352 z-score: 442.4 E(): 2.4e-17, 29.3% identity in 215 aa overlap. No Hp ortholog, but 28.1% identical to HP0191 fumarate reductase, iron-sulfur subunit (frdB). Contains PS00197 2Fe-2S ferredoxins,iron-sulfur binding region signature, PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature, and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and [...] | Original (2000) note: Cj0410, frdB, probable fumarate reductase iron-sulfur protein, len: 723 aa; similar to FRDB_WOLSU fumarate reductase iron-sulfur protein (EC 1.3.99.1) (239 aa), fasta scores; opt: 1211 z-score: 1762.6 E(): 0, 68.4% identity in 237 aa overlap. 65.8% identity to HP0191. Contains PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains., score 41.20,E-value 1.1e-10; Updated (2006) note: Pfam domain PF00111 2Fe-2S iron-sulfur cluster binding domain was iden [...] | 0.690 |
| thiS | moaD | Cj1047c | Cj1517 | Putative thiamine biosynthesis protein; Original (2000) note: Cj1047c, unknown, len: 63 aa; similar to hypothetical proteins e.g. YC40_ODOSI (73 aa),fasta scores; opt: 131 z-score: 200.4 E(): 0.00072, 37.1% identity in 62 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF02597 ThiS family identified within CDS. Product modified to a more specific family member based on motif match. Characterisation has been carried out within Escherichia coli and Bacillus subtilis with marginal simlilarity score. Putativae kept in product function. Functional classification - Biosynthesis of [...] | Original (2000) note: Cj1517, moaD, possible molybdopterin converting factor, subunit 1, len: 73 aa; similar to many predicted moaD genes, e.g. TR:O31706 (EMBL:AF012285) Bacillus subtilis molybdopterin converting factor (subunit 1) (77 aa), fasta scores; opt: 111 z-score: 167.7 E(): 0.051, 30.5% identity in 59 aa overlap, and weakly similar to MOAD_ECOLI molybdopterin [mpt] converting factor, subunit 1 (81 aa), fasta scores; opt: 81 z-score: 127.5 E(): 8.8, 38.5% identity in 26 aa overlap. 61.6% identity to HP0801; Updated (2006) note: Pfam domain PF02597 ThiS family identified within [...] | 0.582 |