(11 nodes) Glucose/Sorbosone dehydrogenase network (Streptomyces niveus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	AQU65223.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (959 aa)
	AQU65569.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1156 aa)
	AQU65637.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (825 aa)
	AQU70673.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1225 aa)
	AQU65700.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1234 aa)
	AQU65721.1	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AQU65899.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AQU66398.1	Glucose sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	AQU68214.1	Sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	AQU68296.1	Sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AQU68853.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)

Your Current Organism:

Streptomyces niveus

NCBI taxonomy Id: 193462
Other names: ATCC 19793, ATCC 23965 [[Streptomyces spheroides]], BCRC 11514, BCRC 11559 [[Streptomyces spheroides]], CBS 491.62 [[Streptomyces spheroides]], CBS 545.68, CBS 948.68 [[Streptomyces spheroides]], CCUG 11108, DSM 40088, DSM 40292 [[Streptomyces spheroides]], DSM 41788 [[Streptomyces laceyi]], IMET 43503, ISP 5088, ISP 5292 [[Streptomyces spheroides]], JCM 12606 [[Streptomyces laceyi]], JCM 4251, JCM 4252 [[Streptomyces spheroides]], JCM 4599, JCM 4670 [[Streptomyces spheroides]], LMG 19392 [[Streptomyces spheroides]], LMG 19395, LMG 5980, LMG:19392 [[Streptomyces spheroides]], LMG:19395, LMG:5980, NBRC 100783 [[Streptomyces laceyi]], NBRC 12804, NBRC 12917 [[Streptomyces spheroides]], NCIMB 11891 [[Streptomyces spheroides]], NCIMB 13928 [[Streptomyces laceyi]], NCIMB 9219, NRRL 2449 [[Streptomyces spheroides]], NRRL 2466, NRRL B-24638 [[Streptomyces laceyi]], NRRL-ISP 5088, NRRL-ISP 5292 [[Streptomyces spheroides]], RIA 700 [[Streptomyces spheroides]], S. niveus, Streptomyces laceyi, Streptomyces laceyi Manfio et al. 2003, Streptomyces spheroides, UNIQEM 179, strain C7654 [[Streptomyces laceyi]]

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQU65223.1	AQU65721.1	BBN63_02085	BBN63_05160	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AQU65569.1	AQU65721.1	BBN63_04260	BBN63_05160	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AQU65637.1	AQU65721.1	BBN63_04680	BBN63_05160	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AQU65700.1	AQU70673.1	BBN63_05035	BBN63_05030	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AQU65721.1	AQU65223.1	BBN63_05160	BBN63_02085	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AQU65721.1	AQU65569.1	BBN63_05160	BBN63_04260	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AQU65721.1	AQU65637.1	BBN63_05160	BBN63_04680	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AQU65721.1	AQU68853.1	BBN63_05160	BBN63_24325	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AQU68853.1	AQU65721.1	BBN63_24325	BBN63_05160	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AQU70673.1	AQU65700.1	BBN63_05030	BBN63_05035	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505

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