STRINGSTRING
ARF60045.1 ARF60045.1 ARF60258.1 ARF60258.1 ARF60679.1 ARF60679.1 ARF60680.1 ARF60680.1 ARF60681.1 ARF60681.1 ARF60682.1 ARF60682.1 ARF60683.1 ARF60683.1 ARF66007.1 ARF66007.1 ARF60684.1 ARF60684.1 ARF61648.1 ARF61648.1 ispE ispE ispD-2 ispD-2 ispF ispF ARF63598.1 ARF63598.1 ARF64006.1 ARF64006.1 ispH ispH ARF64207.1 ARF64207.1 ARF64400.1 ARF64400.1 ARF64465.1 ARF64465.1 dxr dxr ispG ispG dxs dxs idi idi B1H20_31535 B1H20_31535 ARF65447.1 ARF65447.1 ARF65448.1 ARF65448.1 ARF65449.1 ARF65449.1 ARF66476.1 ARF66476.1 ARF65450.1 ARF65450.1 ARF65453.1 ARF65453.1 ARF66477.1 ARF66477.1 ARF65454.1 ARF65454.1 ARF65455.1 ARF65455.1 ARF65456.1 ARF65456.1 ARF65457.1 ARF65457.1 ARF65458.1 ARF65458.1 ARF65706.1 ARF65706.1 ARF65915.1 ARF65915.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ARF60045.1Geosmin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)
ARF60258.1Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
ARF60679.1Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
ARF60680.1Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
ARF60681.1Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
ARF60682.12Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
ARF60683.1Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
ARF66007.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
ARF60684.1Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (420 aa)
ARF61648.1Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (275 aa)
ispE4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (301 aa)
ispD-22-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (255 aa)
ispF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (182 aa)
ARF63598.1Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (336 aa)
ARF64006.1Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (253 aa)
ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (327 aa)
ARF64207.1Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (347 aa)
ARF64400.1Terpene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
ARF64465.1Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (260 aa)
dxr1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (417 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (385 aa)
dxs1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (638 aa)
idiIsopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (197 aa)
B1H20_31535Hypothetical protein; Internal stop; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
ARF65447.1Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (612 aa)
ARF65448.1Nucleotide sugar-1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
ARF65449.1Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
ARF66476.1Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
ARF65450.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
ARF65453.1Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
ARF66477.1Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
ARF65454.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
ARF65455.1Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (367 aa)
ARF65456.1Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
ARF65457.11-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
ARF65458.1Hopanoid biosynthesis associated radical SAM protein HpnH; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
ARF65706.1Polyprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (349 aa)
ARF65915.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
Your Current Organism:
Streptomyces violaceoruber
NCBI taxonomy Id: 1935
Other names: ATCC 14980, ATCC 19816, ATCC 3355, Actinomyces violaceus-ruber, BCRC 11489, CBS 569.68, CCRC 11489, CCRC:11489, DSM 40049, IFO 12826, ISP 5049, JCM 4423, KCTC 9787, NBRC 12826, NRRL B-12594, NRRL B-2935, NRRL B-3025, NRRL B-3319, NRRL-ISP 5049, S. violaceoruber, Streptomyces violaceiruber, Streptomyces violaceus-ruber, UNIQEM 203, VKM Ac-726
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