(7 nodes) Lactate oxidation network (Mycobacterium sp. MS1601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQA01779.1	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AQA02741.1	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AQA03193.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AQA04156.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AQA03304.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	AQA01350.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AQA01205.1	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)

Your Current Organism:

Mycobacterium sp. MS1601

NCBI taxonomy Id: 1936029
Other names: M. sp. MS1601

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA01205.1	AQA01350.1	BVC93_00830	BVC93_01660	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01205.1	AQA01779.1	BVC93_00830	BVC93_04255	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AQA01205.1	AQA02741.1	BVC93_00830	BVC93_10175	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AQA01205.1	AQA03193.1	BVC93_00830	BVC93_13060	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01205.1	AQA03304.1	BVC93_00830	BVC93_13760	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01205.1	AQA04156.1	BVC93_00830	BVC93_18915	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01350.1	AQA01205.1	BVC93_01660	BVC93_00830	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01350.1	AQA01779.1	BVC93_01660	BVC93_04255	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01350.1	AQA02741.1	BVC93_01660	BVC93_10175	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01779.1	AQA01205.1	BVC93_04255	BVC93_00830	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AQA01779.1	AQA01350.1	BVC93_04255	BVC93_01660	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01779.1	AQA03193.1	BVC93_04255	BVC93_13060	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01779.1	AQA03304.1	BVC93_04255	BVC93_13760	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA01779.1	AQA04156.1	BVC93_04255	BVC93_18915	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA02741.1	AQA01205.1	BVC93_10175	BVC93_00830	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AQA02741.1	AQA01350.1	BVC93_10175	BVC93_01660	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA02741.1	AQA03193.1	BVC93_10175	BVC93_13060	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA02741.1	AQA03304.1	BVC93_10175	BVC93_13760	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA02741.1	AQA04156.1	BVC93_10175	BVC93_18915	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQA03193.1	AQA01205.1	BVC93_13060	BVC93_00830	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718