(21 nodes) FAD-binding, type PCMH-like superfamily network (Mycobacterium sp. MS1601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQA04643.1	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AQA05734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AQA05320.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AQA06622.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	AQA04574.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	AQA04156.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AQA03783.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AQA03751.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (939 aa)
	AQA06426.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AQA03318.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AQA03304.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	AQA03193.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AQA03163.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AQA03039.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AQA02874.1	decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AQA02794.1	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	AQA02255.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	murB	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (349 aa)
	AQA01486.1	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AQA01378.1	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AQA01350.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)

Your Current Organism:

Mycobacterium sp. MS1601

NCBI taxonomy Id: 1936029
Other names: M. sp. MS1601

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA01350.1	AQA03751.1	BVC93_01660	BVC93_16430	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AQA03163.1	AQA03318.1	BVC93_12830	BVC93_13835	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AQA03193.1	AQA03751.1	BVC93_13060	BVC93_16430	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AQA03304.1	AQA03751.1	BVC93_13760	BVC93_16430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AQA03318.1	AQA03163.1	BVC93_13835	BVC93_12830	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AQA03751.1	AQA01350.1	BVC93_16430	BVC93_01660	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AQA03751.1	AQA03193.1	BVC93_16430	BVC93_13060	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AQA03751.1	AQA03304.1	BVC93_16430	BVC93_13760	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AQA03751.1	AQA04156.1	BVC93_16430	BVC93_18915	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AQA04156.1	AQA03751.1	BVC93_18915	BVC93_16430	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433