(18 nodes) ACP-like superfamily network (Mycobacterium sp. MS1601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQA04404.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AQA01215.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
	AQA02542.1	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	AQA02676.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1294 aa)
	AQA02887.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1782 aa)
	AQA06579.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1672 aa)
	AQA04545.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1157 aa)
	AQA04548.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (964 aa)
	AQA04549.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1726 aa)
	AQA06580.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1474 aa)
	AQA04700.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	acpP	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (98 aa)
	AQA05193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1277 aa)
	AQA05194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AQA05215.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2091 aa)
	AQA05617.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2101 aa)
	AQA06816.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (845 aa)
	BVC93_29185	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (1159 aa)

Your Current Organism:

Mycobacterium sp. MS1601

NCBI taxonomy Id: 1936029
Other names: M. sp. MS1601

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA01215.1	AQA02542.1	BVC93_00895	BVC93_08975	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AQA01215.1	AQA02676.1	BVC93_00895	BVC93_09775	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AQA01215.1	AQA02887.1	BVC93_00895	BVC93_11100	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AQA01215.1	AQA04545.1	BVC93_00895	BVC93_21320	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AQA01215.1	AQA04548.1	BVC93_00895	BVC93_21335	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AQA01215.1	AQA04549.1	BVC93_00895	BVC93_21340	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AQA01215.1	AQA05215.1	BVC93_00895	BVC93_25630	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AQA01215.1	AQA05617.1	BVC93_00895	BVC93_28220	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AQA01215.1	AQA06580.1	BVC93_00895	BVC93_21345	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AQA01215.1	AQA06816.1	BVC93_00895	BVC93_28665	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AQA01215.1	BVC93_29185	BVC93_00895	BVC93_29185	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AQA01215.1	acpP	BVC93_00895	BVC93_22730	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.788
AQA02542.1	AQA01215.1	BVC93_08975	BVC93_00895	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AQA02542.1	AQA02676.1	BVC93_08975	BVC93_09775	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AQA02542.1	AQA02887.1	BVC93_08975	BVC93_11100	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQA02542.1	AQA04404.1	BVC93_08975	BVC93_20495	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AQA02542.1	AQA04545.1	BVC93_08975	BVC93_21320	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AQA02542.1	AQA04548.1	BVC93_08975	BVC93_21335	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQA02542.1	AQA04549.1	BVC93_08975	BVC93_21340	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AQA02542.1	AQA04700.1	BVC93_08975	BVC93_22305	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969