(30 nodes) Vicinal oxygen chelate (VOC) domain network (Mycobacterium sp. MS1601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQA02299.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AQA01245.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AQA01348.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AQA01943.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AQA02037.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	AQA02240.1	Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AQA02323.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	AQA02357.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
	AQA02436.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AQA02590.1	2,3-dihydroxybiphenyl 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AQA02753.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	AQA03001.1	Bleomycin resistance family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
	AQA06324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
	AQA06375.1	Glyoxalase/bleomycin resistance/dioxygenase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AQA06385.1	2,3-dihydroxybiphenyl 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AQA03305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (145 aa)
	AQA03324.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AQA03756.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AQA04082.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	AQA04136.1	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	AQA04137.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	AQA04169.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AQA04232.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AQA04284.1	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AQA04527.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
	AQA04973.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	AQA05500.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
	AQA05539.1	Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	AQA05557.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AQA05731.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)

Your Current Organism:

Mycobacterium sp. MS1601

NCBI taxonomy Id: 1936029
Other names: M. sp. MS1601

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA02240.1	AQA02299.1	BVC93_07120	BVC93_07490	Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AQA02240.1	AQA04169.1	BVC93_07120	BVC93_18990	Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AQA02299.1	AQA02240.1	BVC93_07490	BVC93_07120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AQA02299.1	AQA05500.1	BVC93_07490	BVC93_27510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AQA02323.1	AQA04973.1	BVC93_07635	BVC93_24080	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AQA02357.1	AQA05557.1	BVC93_07825	BVC93_27855	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AQA03324.1	AQA04082.1	BVC93_13880	BVC93_18455	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AQA04082.1	AQA03324.1	BVC93_18455	BVC93_13880	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AQA04136.1	AQA04137.1	BVC93_18790	BVC93_18795	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AQA04137.1	AQA04136.1	BVC93_18795	BVC93_18790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AQA04169.1	AQA02240.1	BVC93_18990	BVC93_07120	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AQA04169.1	AQA04973.1	BVC93_18990	BVC93_24080	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
AQA04169.1	AQA05500.1	BVC93_18990	BVC93_27510	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA04973.1	AQA02323.1	BVC93_24080	BVC93_07635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AQA04973.1	AQA04169.1	BVC93_24080	BVC93_18990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
AQA04973.1	AQA05500.1	BVC93_24080	BVC93_27510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AQA05500.1	AQA02299.1	BVC93_27510	BVC93_07490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AQA05500.1	AQA04169.1	BVC93_27510	BVC93_18990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA05500.1	AQA04973.1	BVC93_27510	BVC93_24080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AQA05557.1	AQA02357.1	BVC93_27855	BVC93_07825	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659