(10 nodes) Biosynthesis of enediyne antibiotics network (Mycobacterium sp. MS1601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQA01371.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	AQA01495.1	2-methyl-1,2 propanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	AQA03062.1	TIGR03084 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AQA06366.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AQA06383.1	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AQA03348.1	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AQA06579.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1672 aa)
	AQA05193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1277 aa)
	AQA05194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AQA05195.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)

Your Current Organism:

Mycobacterium sp. MS1601

NCBI taxonomy Id: 1936029
Other names: M. sp. MS1601

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA01371.1	AQA05193.1	BVC93_01770	BVC93_25450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA01371.1	AQA05194.1	BVC93_01770	BVC93_25455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA01371.1	AQA05195.1	BVC93_01770	BVC93_25460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AQA01371.1	AQA06579.1	BVC93_01770	BVC93_21310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AQA01495.1	AQA03062.1	BVC93_02530	BVC93_12170	2-methyl-1,2 propanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR03084 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AQA03062.1	AQA01495.1	BVC93_12170	BVC93_02530	TIGR03084 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-methyl-1,2 propanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AQA03062.1	AQA03348.1	BVC93_12170	BVC93_14035	TIGR03084 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AQA03348.1	AQA03062.1	BVC93_14035	BVC93_12170	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR03084 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AQA05193.1	AQA01371.1	BVC93_25450	BVC93_01770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA05193.1	AQA05194.1	BVC93_25450	BVC93_25455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AQA05193.1	AQA05195.1	BVC93_25450	BVC93_25460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQA05193.1	AQA06366.1	BVC93_25450	BVC93_13015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AQA05193.1	AQA06383.1	BVC93_25450	BVC93_13615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AQA05193.1	AQA06579.1	BVC93_25450	BVC93_21310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AQA05194.1	AQA01371.1	BVC93_25455	BVC93_01770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AQA05194.1	AQA05193.1	BVC93_25455	BVC93_25450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AQA05194.1	AQA05195.1	BVC93_25455	BVC93_25460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQA05194.1	AQA06366.1	BVC93_25455	BVC93_13015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AQA05194.1	AQA06383.1	BVC93_25455	BVC93_13615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AQA05194.1	AQA06579.1	BVC93_25455	BVC93_21310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652