(10 nodes) Riboflavin synthase-like beta-barrel network (Aquaspirillum sp. LM1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQR63883.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AQR64099.1	Ferric reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	AQR64202.1	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AQR64320.1	Riboflavin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	AQR64813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AQR64861.1	ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AQR65358.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	AQR65697.1	Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (404 aa)
	AQR65830.1	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AQR66530.1	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)

Your Current Organism:

Aquaspirillum sp. LM1

NCBI taxonomy Id: 1938604
Other names: A. sp. LM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR63883.1	AQR64202.1	BXU06_01465	BXU06_03375	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AQR63883.1	AQR64813.1	BXU06_01465	BXU06_06855	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AQR63883.1	AQR65358.1	BXU06_01465	BXU06_10045	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AQR63883.1	AQR66530.1	BXU06_01465	BXU06_16840	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AQR64202.1	AQR63883.1	BXU06_03375	BXU06_01465	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AQR64202.1	AQR64813.1	BXU06_03375	BXU06_06855	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AQR64202.1	AQR65358.1	BXU06_03375	BXU06_10045	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AQR64202.1	AQR65697.1	BXU06_03375	BXU06_12030	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.	0.647
AQR64202.1	AQR66530.1	BXU06_03375	BXU06_16840	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AQR64813.1	AQR63883.1	BXU06_06855	BXU06_01465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AQR64813.1	AQR64202.1	BXU06_06855	BXU06_03375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AQR64813.1	AQR65358.1	BXU06_06855	BXU06_10045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AQR64813.1	AQR66530.1	BXU06_06855	BXU06_16840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AQR65358.1	AQR63883.1	BXU06_10045	BXU06_01465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AQR65358.1	AQR64202.1	BXU06_10045	BXU06_03375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AQR65358.1	AQR64813.1	BXU06_10045	BXU06_06855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AQR65358.1	AQR66530.1	BXU06_10045	BXU06_16840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AQR65697.1	AQR64202.1	BXU06_12030	BXU06_03375	Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AQR65697.1	AQR66530.1	BXU06_12030	BXU06_16840	Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
AQR66530.1	AQR63883.1	BXU06_16840	BXU06_01465	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612