STRINGSTRING
CT0731 CT0731 CT0732 CT0732 CT0733 CT0733 rny rny CT0957 CT0957 CT0959 CT0959 CT0961 CT0961 CT0964 CT0964 CT0968 CT0968 CT1255 CT1255 CT1257 CT1257 CT1888 CT1888 CT1889 CT1889 prtC prtC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CT0731Hypothetical protein; Identified by Glimmer2; putative. (107 aa)
CT0732Conserved hypothetical protein; Identified by similarity to EGAD:107725. (89 aa)
CT0733Hypothetical protein; Identified by Glimmer2; putative. (32 aa)
rnyConserved hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (524 aa)
CT0957Hypothetical protein; Identified by Glimmer2; putative. (344 aa)
CT0959Hypothetical protein; Identified by Glimmer2; putative. (132 aa)
CT0961Identified by match to protein family HMM PF00597. (222 aa)
CT0964Methylase, putative; Identified by similarity to GP:4376901; match to protein family HMM PF03602; match to protein family HMM TIGR00095. (184 aa)
CT0968Conserved hypothetical protein; Identified by similarity to EGAD:12645; match to protein family HMM PF04468. (333 aa)
CT1255spoU rRNA methylase family protein; Identified by match to protein family HMM PF00588. (169 aa)
CT1257Hypothetical protein; Identified by Glimmer2; putative. (139 aa)
CT1888spoU rRNA methylase family protein; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (263 aa)
CT1889Hypothetical protein; Identified by Glimmer2; putative. (264 aa)
prtCCollagenase; Identified by similarity to GP:2505967; match to protein family HMM PF01136. (411 aa)
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.