5 items (Chlorobaculum tepidum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CT1741	Hypothetical protein; Identified by Glimmer2; putative. (112 aa)
	feoB-1	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (791 aa)
	feoA-1	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023. (75 aa)
	CT1744	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023. (93 aa)
	CT1745	Hypothetical protein; Identified by Glimmer2; putative. (267 aa)

Your Current Organism:

Chlorobaculum tepidum

NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT1741	CT1744	CT1741	CT1744	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	0.636
CT1741	CT1745	CT1741	CT1745	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.595
CT1741	feoA-1	CT1741	CT1743	Hypothetical protein; Identified by Glimmer2; putative.	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	0.636
CT1741	feoB-1	CT1741	CT1742	Hypothetical protein; Identified by Glimmer2; putative.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.735
CT1744	CT1741	CT1744	CT1741	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	Hypothetical protein; Identified by Glimmer2; putative.	0.636
CT1744	CT1745	CT1744	CT1745	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	Hypothetical protein; Identified by Glimmer2; putative.	0.746
CT1744	feoA-1	CT1744	CT1743	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	0.773
CT1744	feoB-1	CT1744	CT1742	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.893
CT1745	CT1741	CT1745	CT1741	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.595
CT1745	CT1744	CT1745	CT1744	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	0.746
CT1745	feoA-1	CT1745	CT1743	Hypothetical protein; Identified by Glimmer2; putative.	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	0.746
CT1745	feoB-1	CT1745	CT1742	Hypothetical protein; Identified by Glimmer2; putative.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.746
feoA-1	CT1741	CT1743	CT1741	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	Hypothetical protein; Identified by Glimmer2; putative.	0.636
feoA-1	CT1744	CT1743	CT1744	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	0.773
feoA-1	CT1745	CT1743	CT1745	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	Hypothetical protein; Identified by Glimmer2; putative.	0.746
feoA-1	feoB-1	CT1743	CT1742	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.962
feoB-1	CT1741	CT1742	CT1741	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Hypothetical protein; Identified by Glimmer2; putative.	0.735
feoB-1	CT1744	CT1742	CT1744	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Conserved hypothetical protein; Identified by similarity to GP:5458486; match to protein family HMM PF04023.	0.893
feoB-1	CT1745	CT1742	CT1745	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Hypothetical protein; Identified by Glimmer2; putative.	0.746
feoB-1	feoA-1	CT1742	CT1743	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Ferrous iron transport protein A; Identified by similarity to EGAD:9218; match to protein family HMM PF04023.	0.962