(14 nodes) Alpha-helical ferredoxin network (Chlorobaculum tepidum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CT1245	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754. (500 aa)
	gltD-2	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317. (490 aa)
	CT1248	Hydrogenase, iron-sulfur binding protein, putative; Identified by similarity to SP:Q50570; match to protein family HMM PF00037. (276 aa)
	hydB-2	Hydrogenase/sulfur reductase, beta subunit; Identified by similarity to EGAD:32895; match to protein family HMM PF00037. (337 aa)
	CT2041	Succinate/fumarate oxidoreductase, iron-sulfur protein, putative; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. (345 aa)
	CT2146	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754. (662 aa)
	dsrK	dsrK protein; Identified by similarity to GP:3228387. (550 aa)
	CT2247	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992. (577 aa)
	sdhB	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037. (257 aa)
	gltD-1	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316. (472 aa)
	CT0282	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992. (582 aa)
	CT0854	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992. (577 aa)
	CT0868	Heterodisulfide reductase, putative; Identified by similarity to EGAD:105029. (391 aa)
	CT1139	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913. (1160 aa)

Your Current Organism:

Chlorobaculum tepidum

NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT0282	CT0854	CT0282	CT0854	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0282	CT1139	CT0282	CT1139	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	0.612
CT0282	CT2041	CT0282	CT2041	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Succinate/fumarate oxidoreductase, iron-sulfur protein, putative; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384.	0.795
CT0282	CT2247	CT0282	CT2247	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0282	gltD-1	CT0282	CT0473	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	0.919
CT0282	gltD-2	CT0282	CT0402	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.925
CT0282	sdhB	CT0282	CT2266	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037.	0.795
CT0854	CT0282	CT0854	CT0282	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0854	CT1139	CT0854	CT1139	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	0.430
CT0854	gltD-2	CT0854	CT0402	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.450
CT0868	CT1245	CT0868	CT1245	Heterodisulfide reductase, putative; Identified by similarity to EGAD:105029.	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.	0.456
CT1139	CT0282	CT1139	CT0282	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.612
CT1139	CT0854	CT1139	CT0854	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.430
CT1139	CT1245	CT1139	CT1245	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.	0.648
CT1139	CT2041	CT1139	CT2041	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Succinate/fumarate oxidoreductase, iron-sulfur protein, putative; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384.	0.428
CT1139	CT2247	CT1139	CT2247	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.430
CT1139	sdhB	CT1139	CT2266	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037.	0.428
CT1245	CT0868	CT1245	CT0868	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.	Heterodisulfide reductase, putative; Identified by similarity to EGAD:105029.	0.456
CT1245	CT1139	CT1245	CT1139	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.	Oxidoreductase, FAD-binding; Identified by similarity to EGAD:89694; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	0.648
CT1245	CT1248	CT1245	CT1248	Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.	Hydrogenase, iron-sulfur binding protein, putative; Identified by similarity to SP:Q50570; match to protein family HMM PF00037.	0.887