(7 nodes) Mixed, incl. Polysaccharide transport, and Protein tyrosine kinase activity network (Cellvibrio sp. PSBB023)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQT60209.1	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AQT60210.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AQT62351.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AQT61407.1	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	AQT62485.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AQT61408.1	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AQT61409.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)

Your Current Organism:

Cellvibrio sp. PSBB023

NCBI taxonomy Id: 1945512
Other names: C. sp. PSBB023

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQT60209.1	AQT60210.1	B0D95_08955	B0D95_08960	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AQT60209.1	AQT61407.1	B0D95_08955	B0D95_15810	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AQT60209.1	AQT61408.1	B0D95_08955	B0D95_15820	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AQT60209.1	AQT61409.1	B0D95_08955	B0D95_15825	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AQT60209.1	AQT62351.1	B0D95_08955	B0D95_08965	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQT60209.1	AQT62485.1	B0D95_08955	B0D95_15815	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AQT60210.1	AQT60209.1	B0D95_08960	B0D95_08955	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AQT60210.1	AQT61407.1	B0D95_08960	B0D95_15810	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AQT60210.1	AQT61408.1	B0D95_08960	B0D95_15820	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AQT60210.1	AQT61409.1	B0D95_08960	B0D95_15825	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AQT60210.1	AQT62351.1	B0D95_08960	B0D95_08965	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AQT60210.1	AQT62485.1	B0D95_08960	B0D95_15815	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AQT61407.1	AQT60209.1	B0D95_15810	B0D95_08955	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AQT61407.1	AQT60210.1	B0D95_15810	B0D95_08960	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AQT61407.1	AQT61408.1	B0D95_15810	B0D95_15820	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AQT61407.1	AQT61409.1	B0D95_15810	B0D95_15825	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AQT61407.1	AQT62351.1	B0D95_15810	B0D95_08965	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AQT61407.1	AQT62485.1	B0D95_15810	B0D95_15815	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AQT61408.1	AQT60209.1	B0D95_15820	B0D95_08955	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AQT61408.1	AQT60210.1	B0D95_15820	B0D95_08960	Chain length-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553