(10 nodes) DNA restriction-modification system, and Protein adenylylation network (Campylobacter coli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	ydeN	Putative hydrolase YdeN. (200 aa)
	ALU98772.1	Putative type I restriction enzymeP M protein. (495 aa)
	ALU98773.1	Adenosine monophosphate-protein transferase SoFic. (199 aa)
	ALU98774.1	Adenosine monophosphate-protein transferase SoFic. (148 aa)
	hsdS	Type-1 restriction enzyme EcoKI specificity protein. (418 aa)
	ALU98776.1	Hypothetical protein. (805 aa)
	hsdR	Type-1 restriction enzyme R protein. (772 aa)
	adhA	Putative formaldehyde dehydrogenase AdhA. (359 aa)
	cjeI	Hypothetical protein. (583 aa)
	ALU99292.1	Type I restriction modification DNA specificity domain protein. (696 aa)

Your Current Organism:

Campylobacter coli

NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALU98772.1	ALU98773.1	ATE51_00462	ATE51_00464	Putative type I restriction enzymeP M protein.	Adenosine monophosphate-protein transferase SoFic.	0.795
ALU98772.1	ALU98774.1	ATE51_00462	ATE51_00466	Putative type I restriction enzymeP M protein.	Adenosine monophosphate-protein transferase SoFic.	0.730
ALU98772.1	ALU98776.1	ATE51_00462	ATE51_00470	Putative type I restriction enzymeP M protein.	Hypothetical protein.	0.498
ALU98772.1	ALU99292.1	ATE51_00462	ATE51_01516	Putative type I restriction enzymeP M protein.	Type I restriction modification DNA specificity domain protein.	0.783
ALU98772.1	cjeI	ATE51_00462	ATE51_01514	Putative type I restriction enzymeP M protein.	Hypothetical protein.	0.897
ALU98772.1	hsdR	ATE51_00462	ATE51_00472	Putative type I restriction enzymeP M protein.	Type-1 restriction enzyme R protein.	0.976
ALU98772.1	hsdS	ATE51_00462	ATE51_00468	Putative type I restriction enzymeP M protein.	Type-1 restriction enzyme EcoKI specificity protein.	0.998
ALU98772.1	ydeN	ATE51_00462	ATE51_00460	Putative type I restriction enzymeP M protein.	Putative hydrolase YdeN.	0.693
ALU98773.1	ALU98772.1	ATE51_00464	ATE51_00462	Adenosine monophosphate-protein transferase SoFic.	Putative type I restriction enzymeP M protein.	0.795
ALU98773.1	ALU98774.1	ATE51_00464	ATE51_00466	Adenosine monophosphate-protein transferase SoFic.	Adenosine monophosphate-protein transferase SoFic.	0.992
ALU98773.1	ALU98776.1	ATE51_00464	ATE51_00470	Adenosine monophosphate-protein transferase SoFic.	Hypothetical protein.	0.466
ALU98773.1	hsdR	ATE51_00464	ATE51_00472	Adenosine monophosphate-protein transferase SoFic.	Type-1 restriction enzyme R protein.	0.485
ALU98773.1	hsdS	ATE51_00464	ATE51_00468	Adenosine monophosphate-protein transferase SoFic.	Type-1 restriction enzyme EcoKI specificity protein.	0.485
ALU98773.1	ydeN	ATE51_00464	ATE51_00460	Adenosine monophosphate-protein transferase SoFic.	Putative hydrolase YdeN.	0.693
ALU98774.1	ALU98772.1	ATE51_00466	ATE51_00462	Adenosine monophosphate-protein transferase SoFic.	Putative type I restriction enzymeP M protein.	0.730
ALU98774.1	ALU98773.1	ATE51_00466	ATE51_00464	Adenosine monophosphate-protein transferase SoFic.	Adenosine monophosphate-protein transferase SoFic.	0.992
ALU98774.1	ALU98776.1	ATE51_00466	ATE51_00470	Adenosine monophosphate-protein transferase SoFic.	Hypothetical protein.	0.507
ALU98774.1	hsdR	ATE51_00466	ATE51_00472	Adenosine monophosphate-protein transferase SoFic.	Type-1 restriction enzyme R protein.	0.525
ALU98774.1	hsdS	ATE51_00466	ATE51_00468	Adenosine monophosphate-protein transferase SoFic.	Type-1 restriction enzyme EcoKI specificity protein.	0.525
ALU98774.1	ydeN	ATE51_00466	ATE51_00460	Adenosine monophosphate-protein transferase SoFic.	Putative hydrolase YdeN.	0.630

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