(7 nodes) Mixed, incl. GspF/PilC family, and Cell division protein FtsA network (Clostridium perfringens 13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPE2278	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT. (186 aa)
	CPE2281	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT. (405 aa)
	CPE2282	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT. (188 aa)
	CPE2283	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap. (384 aa)
	CPE2285	401 aa, similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 putative transmembrane regions were found by PSORT. (401 aa)
	CPE2286	563 aa, similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap. (563 aa)
	CPE2287	Probable prepilin peptidase; 247 aa, partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT. (247 aa)

Your Current Organism:

Clostridium perfringens 13

NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPE2278	CPE2281	gene:10491586	gene:10491589	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.802
CPE2278	CPE2282	gene:10491586	gene:10491590	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	0.799
CPE2278	CPE2283	gene:10491586	gene:10491591	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap.	0.783
CPE2278	CPE2285	gene:10491586	gene:10491593	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	401 aa, similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 putative transmembrane regions were found by PSORT.	0.673
CPE2278	CPE2286	gene:10491586	gene:10491594	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	563 aa, similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap.	0.687
CPE2278	CPE2287	gene:10491586	gene:10491595	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Probable prepilin peptidase; 247 aa, partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.	0.591
CPE2281	CPE2278	gene:10491589	gene:10491586	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.802
CPE2281	CPE2282	gene:10491589	gene:10491590	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	0.995
CPE2281	CPE2283	gene:10491589	gene:10491591	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap.	0.962
CPE2281	CPE2285	gene:10491589	gene:10491593	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	401 aa, similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 putative transmembrane regions were found by PSORT.	0.734
CPE2281	CPE2286	gene:10491589	gene:10491594	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	563 aa, similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap.	0.692
CPE2281	CPE2287	gene:10491589	gene:10491595	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	Probable prepilin peptidase; 247 aa, partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.	0.637
CPE2282	CPE2278	gene:10491590	gene:10491586	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.799
CPE2282	CPE2281	gene:10491590	gene:10491589	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.995
CPE2282	CPE2283	gene:10491590	gene:10491591	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap.	0.996
CPE2282	CPE2285	gene:10491590	gene:10491593	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	401 aa, similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 putative transmembrane regions were found by PSORT.	0.694
CPE2282	CPE2286	gene:10491590	gene:10491594	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	563 aa, similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap.	0.782
CPE2282	CPE2287	gene:10491590	gene:10491595	Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.	Probable prepilin peptidase; 247 aa, partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.	0.637
CPE2283	CPE2278	gene:10491591	gene:10491586	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap.	Hypothetical protein; 186 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.783
CPE2283	CPE2281	gene:10491591	gene:10491589	384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap.	Hypothetical protein; 405 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.	0.962